Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3237 ATGGTCGAGAAAGGAGTGAAGCCATTGAAGAGGATGAAGACGAGAGTGACGGCTGATTTCTACGACTTCCTCACTTTTCCATCGCCGTCGTTGCTCGCCGTCGCGGAAGGTGATGATTTCACCGGCGGACCGTTCCGTACGAACGTGAGATCGTTCCTATCGAAGTACGCGCTCCTTCCGCCGCCGTCGGCGCTTTTCCCTCACCTGCTGACGTGGCAGATGTTGTTCCGAGTCGGCGACCAGACGACGGAGTCGCCGGAATCTCCGCCGCCGGTGGTGTGCCTTGACGTCGTGGAAGAGGATGTGGCCAGATCTAGATCAGTCTACTGCGATCAGTGCCGAGTTGTTGGTTGGAGTGACCACCCAGTATGCAGGAAACGTTACCACTTTATAATCAAGGCCGATGGTAGCTCCATCGGTGGTTACCACAAGCCTTGCATGTGCTGTGGAGATACCTTGCATTTGTCAGAATCCAAGTGTAAGTCATGCAACCATGTGACGACCACCAATGATGTTGAAGACTGGGTGTATCACCAGTTAGAAAACACGACCCATCTTTTACATGGTGTTGTCCATGCAAATGGTTATGGGCACCTTCTGCGGGTTAATGGCAGGGAAGGGGGGTCAAGAGTTCTTTCTGGTTTCCATATCATGAACTTCTGGGACCGTCTCTGCAAGTCACTTGGAGCCAGAGAAGTTAGTGTAATGGATGTTTCAAGGAAATATGGGCTGGAGTACCGCCTGATCCATGCTATTACAAAGGGACATCCCTGGTATGGTGATTGGGGGTACCAATTTGGCACTGGTAGCTATGGTCTCACGCATGAAGCATATGAGTCTGCAGTTGAATACCTTTCCAATCTACCATTGTCCCTTTTCCTTTCAGAAGGACAGAGACCTGATTCTCGATTGCGGGACACAATCTCATATTACCAGACTTTGTCTGAAACTGGGCTTATAAATATAAGGGATCTCTTTTGTTTTTTGATTGGTTTGATTCACAATGCTCGCATGATAGTGTCGAGGGATGATGATGTCACTTGCAAGAAGCATCGTTGTAATACTGCAGGAGTGTCGTGTTTCTCATCAATGAGTGACATTGAACGTGTGGAGGGATCTATGCTTAGAGTGTTGCGTGCAGTGTCAGGATCCAATTGGGTGAGCTGGCGTACTCTTAAGGGTGCTGTCTGCAAAGTGGCCTCTCTAGAGCTTCTTGACTACTGTCTTGGAGAACTAGGAGGTAAAGCAATATTTGGTGGTATGGTTGTCAATACCCGGTGCAATCCTGTTACTGGAGATTTCGAGTACAGACTAGAGGTGGGGAACAGCTTTTCCCATGCGACAACTGCAAGCAATAAATCTTTGCGTCCTAAGTATCCATCTGAAGTGAATCTCCTGCACGACTTGAGATATTTATATGAGTCTTTGCTTCATCCACGTACGATGCTAGGCTATGACTCTGAGGGGATAAGGACTGCAGCAATGAGCTATGCTCAGAAACTTCTTGACTGCAAGCATTTCGTAAAAGATTATAGGACTGAGATTTCGCCAATGACAAGCGTGAATAGAGTACACCTCTCATGTCAAGTAGTACTAGTTGATGAAACCGATGAAGCTTTTGCAAGTCCTCCCCCAGAACTAATTATCCTGCCCTGGAATTCCACTGTGTCCGACCTCAAGACTGAAGCATCAAATGCTTTTCAAGATGTATACCTCATGTTGAACAGATTTCAAGTTGATGAGCTTTTTGGCTGTAGCTGTGCGGATGATTCCACACCAGTCAAACTCTTGACAGGATCTACGGAATTGGTTCGTGTCCGAGGAAAATGCATTGGGAAAAATGCGTTGAGCCAGTTCCAAAGCGAACGTGGACTTGAGAGGTGGACTGTGGATTGCAGCTGTGGGGCCAAAGATGATGATGGGGAGAGAATGTTGGCATGTGATGCGTGTGGGGAATGGAGGCACACTAGGTGTTCTGGTATTCATGATGCAGATCCTGTCCCTGTGAGGTTCTTTTGCCCAAGATGCCAAAGTTTTGAGTGGTGTCCGAATTCAAGTGGAAACTGA 2067 0.4775 MVEKGVKPLKRMKTRVTADFYDFLTFPSPSLLAVAEGDDFTGGPFRTNVRSFLSKYALLPPPSALFPHLLTWQMLFRVGDQTTESPESPPPVVCLDVVEEDVARSRSVYCDQCRVVGWSDHPVCRKRYHFIIKADGSSIGGYHKPCMCCGDTLHLSESKCKSCNHVTTTNDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRVLSGFHIMNFWDRLCKSLGAREVSVMDVSRKYGLEYRLIHAITKGHPWYGDWGYQFGTGSYGLTHEAYESAVEYLSNLPLSLFLSEGQRPDSRLRDTISYYQTLSETGLINIRDLFCFLIGLIHNARMIVSRDDDVTCKKHRCNTAGVSCFSSMSDIERVEGSMLRVLRAVSGSNWVSWRTLKGAVCKVASLELLDYCLGELGGKAIFGGMVVNTRCNPVTGDFEYRLEVGNSFSHATTASNKSLRPKYPSEVNLLHDLRYLYESLLHPRTMLGYDSEGIRTAAMSYAQKLLDCKHFVKDYRTEISPMTSVNRVHLSCQVVLVDETDEAFASPPPELIILPWNSTVSDLKTEASNAFQDVYLMLNRFQVDELFGCSCADDSTPVKLLTGSTELVRVRGKCIGKNALSQFQSERGLERWTVDCSCGAKDDDGERMLACDACGEWRHTRCSGIHDADPVPVRFFCPRCQSFEWCPNSSGN 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3237 688 CDD PHD_MMD1_like 631 676 - -
Mibi01g3237 688 ProSitePatterns Uncharacterized protein family UPF0054 signature. 188 198 IPR020549 -
Mibi01g3237 688 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 15 678 - -
Mibi01g3237 688 Pfam PHD-finger 632 678 IPR019787 -
Mibi01g3237 688 SMART PHD_3 631 677 IPR001965 -
Mibi01g3237 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 680 IPR013083 -
Mibi01g3237 688 SUPERFAMILY FYVE/PHD zinc finger 622 677 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3237 Mibi-ChrMibi01 57186096 57195214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3237 41 676 PHD Transcription Factor Family AT5G22260 29.192 4.40e-82 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi01g3237 PHD 8.5e-09 CL0390