Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3154 ATGTCTTCTGCCTGCGGCGACGGCGGCGGCGGAGTCACCTCCGGCGCCCCCTTCCAATTCTACTTCTGCCACCAGTGCAACGCCTCCGTCTCCATTCCCACTTCTTCTTCCGGCGATCTCGTTTGTCCCAATTGCAACGGTGGCTTCATCGAAGAACTCAATCATCCTAACCCTAATTTCCCCAATCCCTTCTTTGATTTCCCAGGCAGAGGCGCCGGCGCCGGCGGAAACACCGGATTCCCCCTAGTTTTCTCCACCACCACCTCCTCCGGCGGAGGGCCGGTGTTCGACGATCTTTCCACTCTTTTTGGCGGTGGTGGGCCCAATCGATCGTCTCCCTTCGGAGAATCCGATGCGTTTAATCCTTTCGCGTTTCTTCAGAATTATCTTCAAACCCTAAGGGCAGGCGGTGCAAATGTTCAATTCGTGATCGAGAATTCTGGTGATCCTAATGGGGCATTCAATGTCCCTGCGAATCTGAATTTTGGGGATTATTTCTTTGGTCCTGGCCTTGAGCAATTGATTCAACAGCTTGCCGAGAACGACCCTAACCGACACGGGACGCCGCCGGCTTCGAAGTCCGCCGTCGAGGGCCTCCCCGTTGTCGAGATCTCGCCGGAGTTGCTTTCTTCGGATTCCTCGCAGTGTGCTGTTTGTAAAGACACGTTTGAGCTCGGGGAAGAGGCGAAGATGATGCCTTGTAAACATATATATCATAAAGATTGTATCTTGCCTTGGTTGGAATTGCATAATTCTTGCCCTGTTTGTCGGTATGAATTACCCACGGATGATCCTGATTACGAGCAAAGAACTCGTGGGAATTCTACACAGGTGAATCAGAATCAATCTGTGAGCGAAGGTGGGGCCTCTGGTTCTTCCGAAGGCGGTAATGGTGGCGGAAGCGGGAATGTTGGCGGCGGCGGCGGTGATGCGGCGCCTGGAGAAGAGTCAACGAGAGAACGCAGGTTTAGGGTTTCATTGCCTTGGCCTTTTAGGCAATTGGCTTCCTTAGCGGAGACTAGCAGTACTACTGGGAATGCCAACAATTCTTCTGGAAGAAGTGGAAGCCAGAATTTTGAGTCGGAGACCAGACAAGAAGATCTGGATTAA 1110 0.5252 MSSACGDGGGGVTSGAPFQFYFCHQCNASVSIPTSSSGDLVCPNCNGGFIEELNHPNPNFPNPFFDFPGRGAGAGGNTGFPLVFSTTTSSGGGPVFDDLSTLFGGGGPNRSSPFGESDAFNPFAFLQNYLQTLRAGGANVQFVIENSGDPNGAFNVPANLNFGDYFFGPGLEQLIQQLAENDPNRHGTPPASKSAVEGLPVVEISPELLSSDSSQCAVCKDTFELGEEAKMMPCKHIYHKDCILPWLELHNSCPVCRYELPTDDPDYEQRTRGNSTQVNQNQSVSEGGASGSSEGGNGGGSGNVGGGGGDAAPGEESTRERRFRVSLPWPFRQLASLAETSSTTGNANNSSGRSGSQNFESETRQEDLD 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3154 369 CDD RING-H2_RNF126_like 215 257 - -
Mibi01g3154 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 110 261 - -
Mibi01g3154 369 SUPERFAMILY RING/U-box 197 264 - -
Mibi01g3154 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 263 IPR013083 -
Mibi01g3154 369 FunFam E3 ubiquitin-protein ligase RING1-like 177 263 - -
Mibi01g3154 369 SMART ring_2 216 256 IPR001841 -
Mibi01g3154 369 Pfam zinc-ribbon 19 53 IPR039525 GO:0061630
Mibi01g3154 369 MobiDBLite consensus disorder prediction 335 359 - -
Mibi01g3154 369 ProSiteProfiles Zinc finger RING-type profile. 216 257 IPR001841 -
Mibi01g3154 369 MobiDBLite consensus disorder prediction 271 299 - -
Mibi01g3154 369 Pfam Ring finger domain 215 257 IPR001841 -
Mibi01g3154 369 MobiDBLite consensus disorder prediction 267 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3154 Mibi-ChrMibi01 55532334 55533443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3154 157 301 C3H Transcription Factor Family AT5G01980 45.517 2.16e-34 130