Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3118 ATGTTAGCCAATAACTCCCTCCCTTCCCTTCCCATCTCAGACCCTTTCCCTCCCTCCGATCATAATGCCACCATCACCACCAACAAGCGAAAGCGAAGACCCGCCGGCACTCCAGATCCGGACGCGGAGGTGGTGTCGCTGTCGCCGAAGACGTTGCTGGAGTCGGACCGTTACGTGTGTGAGATCTGCAATCAGGGGTTCCAGAGGGACCAGAACCTGCAGATGCACAGGAGGAGGCACAAGGTGCCATGGAAATTGTTGAAGAGGGAGTCTCCGGCAGCCAGGAAGCGGGTTTTCGTGTGCCCGGAGCCGACGTGTCTCCACCATGACCCCTGCCACGCCCTCGGCGACCTTGTTGGGATCAAGAAACACTTTAGGAGGAAACATAGTAACCATAAACAATGGGTCTGTGAACGTTGCTCTAAAGGTTATGCTGTTCAATCTGATTATAAAGCTCATCTTAAAACTTGTGGTACTCGTGGTCACTCTTGTGATTGTGGCCGTGTCTTCTCCAGGGTGGAGAGCTTCATTGAACACCAAGATGCATGTAACATGGGGCGGCTCCGCCCCGAAACACGGCCACCGCCGGCGTGCTTGTCGCGAACCGCCTCGAGCCCAAGCCGGTCCAGTGAGACCAATTTCAGCACCGGTCCAAATAACTGGAATAATAATAATAATAATAATAATAATAAGGCGATGATGAGTGAACCGGCGGCATTATTGTTGTTGAACCCTACTACCATGAATAATAATGCGGCTACTACTACTAGTGGTGGTGTTCATGAAACTTCATCAATCAACAAGTATAAAGTGTGTCCAAACTTGGATCTTCGTCTCTCCACCACCACCACTAGTTCCATCATCCCCATCATTGATACTACTGTTGTTTCACCAAATAAGAGAGATCATCATGATAGCCGTACTTCAAACCACTTTCGGATTTCGATTGGATCTTCGTCGGAAATGATCGGCCAGAAGAATGATCAATCCAACTGCTGCTTCAATCGGAGGAGTAATAATTCACCAAAGGAGAGCTGTAATAGCAGCCTTAAACCACAAGGTATTAATAATGGAGGGATGAGGGTGGTTCATGAGGAGGAGGAGAAAGAAGAAGAAGCTCATAGAGAGCAGTTGAGGTTGGCAATGGCTGAGAAGGCGTACGCAGAGGAAGCGAGGAAGCAGGCGAAACGACAAATAGAGGTAGCAGAGAAGGAGTTTGCTAATGCAAAGAGCATAAGGCAAGAAGCTCAAGCTGAGCTAGACAAAGCCTATGCCATTAAACAACATGCCATCAAACAAATCAACTCTTTAATGCTTCAAATCACTTGCCATGCTTGTAAACGACAATTTTCAGCCCAAACGACACCCACCATGACCCCAGAAGATAACTCTTTGGCAGTCAGCTACATGTCGTCTGCTCTAACAACTGAAGCTGGCGAGGAAGAGAACTATAACAATAATCATAGTAATGAGAAAACTCATGGCAAAAATAGTAACTCTTTATCATCTCTCTAG 1515 0.4759 MLANNSLPSLPISDPFPPSDHNATITTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPAARKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPETRPPPACLSRTASSPSRSSETNFSTGPNNWNNNNNNNNNKAMMSEPAALLLLNPTTMNNNAATTTSGGVHETSSINKYKVCPNLDLRLSTTTTSSIIPIIDTTVVSPNKRDHHDSRTSNHFRISIGSSSEMIGQKNDQSNCCFNRRSNNSPKESCNSSLKPQGINNGGMRVVHEEEEKEEEAHREQLRLAMAEKAYAEEARKQAKRQIEVAEKEFANAKSIRQEAQAELDKAYAIKQHAIKQINSLMLQITCHACKRQFSAQTTPTMTPEDNSLAVSYMSSALTTEAGEEENYNNNHSNEKTHGKNSNSLSSL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3118 504 MobiDBLite consensus disorder prediction 1 45 - -
Mibi01g3118 504 MobiDBLite consensus disorder prediction 198 232 - -
Mibi01g3118 504 MobiDBLite consensus disorder prediction 336 371 - -
Mibi01g3118 504 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 483 IPR031140 -
Mibi01g3118 504 MobiDBLite consensus disorder prediction 490 504 - -
Mibi01g3118 504 FunFam protein indeterminate-domain 12-like 37 105 - -
Mibi01g3118 504 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
Mibi01g3118 504 Gene3D Classic Zinc Finger 46 131 - -
Mibi01g3118 504 MobiDBLite consensus disorder prediction 336 355 - -
Mibi01g3118 504 MobiDBLite consensus disorder prediction 477 504 - -
Mibi01g3118 504 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Mibi01g3118 504 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Mibi01g3118 504 SMART c2h2final6 135 162 IPR013087 -
Mibi01g3118 504 SMART c2h2final6 58 80 IPR013087 -
Mibi01g3118 504 SMART c2h2final6 99 129 IPR013087 -
Mibi01g3118 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Mibi01g3118 504 MobiDBLite consensus disorder prediction 186 232 - -
Mibi01g3118 504 Coils Coil 364 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3118 Mibi-ChrMibi01 55153906 55158038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3118 369 483 C2H2 Transcription Factor Family AT2G01940 54.783 6.58e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi01g3118 zf-C2H2 0.0049 CL0361