Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi01g3109 | ATGGAAGCCAAGACAATGAGAAGACAAGAGGAGGAGGAGGAGGAAGAGTGTAACGCCGCCAGCAGGAAGCAAAGAGGCAAAAGATTTGGGCCTCTTTTCCAACTGTGTTTCGCCGACACTGATTCTACTTGGCGACCTTCAACCTCCCCACACGGCGGCGCCGCCCCTAATCCCCACCGCCGATTCCTCATTCATCCTGATAACCGATGGTACGCGGTGTGGAAGCATTTGATTCTGATATGGTCAGTGTACTCTTCCTTCTTCACTCCTCTGGAGTTCGGATTCTTCAGAGGATTACCGGAGGAAGTATTCTTGCTCGACATCGCCGGCCAATTTGCTTTCCTCATCGACATCGCCGTCCGATTCTTCGTCGCCTATCGTGACATCCATTCCTATTGCATGGTCTACGATCCCAATCTTATTGCCAAGAGGTACCTGAAGTCTCGCTTCACAGTTGATATTCTTAGCTGTCTCCCGTGGGATTATATTTACAAGGCTACTGGAAGGAAAGAATTCGTCAGGTATTTTTTATGGATTAGGCTAAGTCGAGCAGGTAGAGTGACAGAGTTTTTTGAGAGGTTGGAGAAAGATATTAGGATCAACTACCTCTTTACCCGGATCGCGAAACTTCTTGTTGTAGAACTTTATTGCACCCACACTGCTGCTTGCATCTTCTACTATCTTGCTACCACTTTGCCTCCATCTGACGAAGGTTATACATGGATAGGCAGCTTAAAGATGGGTGATCATAGCTATTCAGACTTTAGACATATCAATCTTTGGAAGTGTTATGTGACATCACTCTACTTTGCAATTGTTACCATGGCAACTGTTGGTTATGGAGACATTCATGCAGTCAATGTCAGGGAAATGATATTTGTCATGATTTATGTCTCCTTTGATATGATTCTTGGTGCTTACCTTCTTGGTAATATGACAGCATTGATTGTGAAAGGATCGAAAACAGAGAGGTTCAGAGATAAAATGGCTGATATTATTAAGTTCATGAATAAAAACAATTTGGACAAGCAGATAACCAAAGCAATAAAAGGCCACTTACGCCTACAGTATGATCGTAGTTACAATGAGGCTGCTGTGCTTCAGGATATTCCAGCCTCTATTCGTGCAAAGATTTCAGTGAATTTGTATGAGCAGTTTATACAAAAAGTTCCTCTTTTCAAGGGATGCTCTTTGGGGTTCATTAAGCAAATTGCAATCAGAGTCCATGAAGAGTTTTTCCTTCCAGGAGAAGTGATTATGGAGCAAGGAAATGTAGCCAATCAACTGTACTTTGTATGCGATGGTGAGCTGGTTGAGACGAGGACAGAAGATGTTGACAAAGAAGTGTTCATAAAGCATTTGCAAATCTACTGTTTCTTTGGCGAGGTTTCTTTTCTTTGTGATATACCTCAATCTTCGACTGTACGAGCACGTGAATTTTGCAAGGTTTTGCGGCTTGACAAGAATTCCTTTTTAGAAACACTGAAGGTATATTATGCAGACGGTAGAGTTATCTTGAACAATCTCCTTGAGGGAAAAGATTCCAGTCTTCAGCAGAAGCTTCTGGGATCAAACTTCTCCTTGACCCTTGAAAACCATGAAACAGAGATGGTTATGAGAATGAATTGTGCTGCATATGAAAGGGACATTTACTTTTTGAAACGTTTGATTCAATCAGGAGCAGATCCCAATAAGACTGATTATGATGGTAGATCACCCTTGCTTGTTTCAGCATCGAATGGATATGTAGAAATTGTTCGCTTCCTTATTGAACAAGGAGTGATTATCAATTTCTGTGATAAATTTGGGAATTCCCCCTTGTTTGAAGCCATAAAGAATGGACATGAAGAAGTAGCTTCTATACTTGTGGAAGCGGGGGCTACTCTTAACATGGATCATGCTGGGAATTTCCTCTGCATGACTGTTGCCAGTAAGGAGTTGAGCCTTCTAAGAAGGGTCTTGGATTATGATCTTAATCCGAATGCCAGAAATTATGATCAAAGAACGGCTCTTCACATAGCTGCTTCTGAAGGTTCTTGTAAAATGGCTGAGGTTCTTCTAGAAGCAGGAGCAAGTGTTTTATCAAAGGACAAATGGGGAAATACACCGCTTGATGAAGCTCATATGGGTGGAAATAGGAACATGATTAAAATGCTCGAGGTTGCAAAAATTTCTCAGTTGGCTGAATTATCCCACAATATTCAAGAACCTCGAGCAAAAGTGCTATTACCATCAACAGATGAAATTCCAAGAAAGAAATGCACTGTTTTTCCTTTCCATCCATGGGATCAGAAAGCAGATAGAAGAGAGGGAATTGTCTTATGGGTTCCAAAAAGCATTGAAGAACTTGTGCAGTTTGCAGTGAAATATCTAAAATCTTCAAGGTTTTCCCATATTTTATCAGAAAATGGGGGTAAAATTCTTGACGTAGACATGATTAGCAATGATGAGAAGCTATTTCTGGTGAGTGAAGAACAATCAGAGAGTTCGTAG | 2493 | 0.4136 | MEAKTMRRQEEEEEEECNAASRKQRGKRFGPLFQLCFADTDSTWRPSTSPHGGAAPNPHRRFLIHPDNRWYAVWKHLILIWSVYSSFFTPLEFGFFRGLPEEVFLLDIAGQFAFLIDIAVRFFVAYRDIHSYCMVYDPNLIAKRYLKSRFTVDILSCLPWDYIYKATGRKEFVRYFLWIRLSRAGRVTEFFERLEKDIRINYLFTRIAKLLVVELYCTHTAACIFYYLATTLPPSDEGYTWIGSLKMGDHSYSDFRHINLWKCYVTSLYFAIVTMATVGYGDIHAVNVREMIFVMIYVSFDMILGAYLLGNMTALIVKGSKTERFRDKMADIIKFMNKNNLDKQITKAIKGHLRLQYDRSYNEAAVLQDIPASIRAKISVNLYEQFIQKVPLFKGCSLGFIKQIAIRVHEEFFLPGEVIMEQGNVANQLYFVCDGELVETRTEDVDKEVFIKHLQIYCFFGEVSFLCDIPQSSTVRAREFCKVLRLDKNSFLETLKVYYADGRVILNNLLEGKDSSLQQKLLGSNFSLTLENHETEMVMRMNCAAYERDIYFLKRLIQSGADPNKTDYDGRSPLLVSASNGYVEIVRFLIEQGVIINFCDKFGNSPLFEAIKNGHEEVASILVEAGATLNMDHAGNFLCMTVASKELSLLRRVLDYDLNPNARNYDQRTALHIAASEGSCKMAEVLLEAGASVLSKDKWGNTPLDEAHMGGNRNMIKMLEVAKISQLAELSHNIQEPRAKVLLPSTDEIPRKKCTVFPFHPWDQKADRREGIVLWVPKSIEELVQFAVKYLKSSRFSHILSENGGKILDVDMISNDEKLFLVSEEQSESS | 830 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi01g3109 | 830 | Pfam | Ion transport protein | 72 | 316 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
| Mibi01g3109 | 830 | Pfam | Ankyrin repeats (many copies) | 654 | 707 | IPR002110 | GO:0005515 | |
| Mibi01g3109 | 830 | Gene3D | Jelly Rolls | 382 | 510 | IPR014710 | - | |
| Mibi01g3109 | 830 | ProSiteProfiles | Ankyrin repeat profile. | 602 | 634 | IPR002110 | GO:0005515 | |
| Mibi01g3109 | 830 | ProSiteProfiles | Ankyrin repeat profile. | 666 | 698 | IPR002110 | GO:0005515 | |
| Mibi01g3109 | 830 | SMART | cnmp_10 | 392 | 510 | IPR000595 | - | |
| Mibi01g3109 | 830 | PRINTS | EAG/ELK/ERG potassium channel family signature | 308 | 317 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Mibi01g3109 | 830 | PRINTS | EAG/ELK/ERG potassium channel family signature | 107 | 117 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Mibi01g3109 | 830 | PRINTS | EAG/ELK/ERG potassium channel family signature | 475 | 483 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Mibi01g3109 | 830 | PRINTS | EAG/ELK/ERG potassium channel family signature | 216 | 226 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Mibi01g3109 | 830 | PRINTS | EAG/ELK/ERG potassium channel family signature | 264 | 281 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Mibi01g3109 | 830 | ProSiteProfiles | KHA domain profile. | 753 | 830 | IPR021789 | - | |
| Mibi01g3109 | 830 | SMART | ANK_2a | 699 | 728 | IPR002110 | GO:0005515 | |
| Mibi01g3109 | 830 | SMART | ANK_2a | 666 | 695 | IPR002110 | GO:0005515 | |
| Mibi01g3109 | 830 | SMART | ANK_2a | 602 | 631 | IPR002110 | GO:0005515 | |
| Mibi01g3109 | 830 | SMART | ANK_2a | 536 | 565 | IPR002110 | GO:0005515 | |
| Mibi01g3109 | 830 | SMART | ANK_2a | 569 | 598 | IPR002110 | GO:0005515 | |
| Mibi01g3109 | 830 | Pfam | KHA, dimerisation domain of potassium ion channel | 752 | 821 | IPR021789 | - | |
| Mibi01g3109 | 830 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 392 | 495 | IPR000595 | - | |
| Mibi01g3109 | 830 | ProSiteProfiles | Ankyrin repeat region circular profile. | 602 | 630 | - | - | |
| Mibi01g3109 | 830 | Gene3D | - | 538 | 721 | IPR036770 | - | |
| Mibi01g3109 | 830 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Mibi01g3109 | 830 | Coils | Coil | 3 | 23 | - | - | |
| Mibi01g3109 | 830 | ProSiteProfiles | Ankyrin repeat region circular profile. | 666 | 698 | - | - | |
| Mibi01g3109 | 830 | CDD | CAP_ED | 392 | 506 | IPR000595 | - | |
| Mibi01g3109 | 830 | Gene3D | Helix hairpin bin | 320 | 381 | - | - | |
| Mibi01g3109 | 830 | Gene3D | - | 73 | 318 | - | - | |
| Mibi01g3109 | 830 | ProSiteProfiles | Ankyrin repeat profile. | 569 | 601 | IPR002110 | GO:0005515 | |
| Mibi01g3109 | 830 | SUPERFAMILY | Voltage-gated potassium channels | 65 | 317 | - | - | |
| Mibi01g3109 | 830 | PANTHER | POTASSIUM CHANNEL AKT1 | 48 | 826 | IPR045319 | GO:0005249|GO:0006813 | |
| Mibi01g3109 | 830 | Pfam | Ankyrin repeats (3 copies) | 544 | 631 | IPR002110 | GO:0005515 | |
| Mibi01g3109 | 830 | FunFam | Potassium channel KAT2 | 380 | 516 | - | - | |
| Mibi01g3109 | 830 | Pfam | Cyclic nucleotide-binding domain | 412 | 496 | IPR000595 | - | |
| Mibi01g3109 | 830 | SUPERFAMILY | Ankyrin repeat | 540 | 719 | IPR036770 | - | |
| Mibi01g3109 | 830 | FunFam | Potassium channel SKOR | 72 | 317 | - | - | |
| Mibi01g3109 | 830 | ProSiteProfiles | Ankyrin repeat region circular profile. | 569 | 601 | - | - | |
| Mibi01g3109 | 830 | SUPERFAMILY | cAMP-binding domain-like | 320 | 509 | IPR018490 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi01g3109 | Mibi-ChrMibi01 | 55011785 | 55022609 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi01g3109 | 3 | 698 | Ion Channels | AT5G37500 | 57.202 | 0.0 | 836 |