Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3107 ATGGTGTTAGGATGGAATCGAAGGAAGAACAACAAGAAGAACAAAAATCCCAACTTGGAGCTTGTAATTCCAAACCAATTCATCTGCCCTGTTTCCCTTGATTTGATGAAAGATCCCATCATCTTATCCACCGGAATGACCTACGATCGTGACAGCATCGATCGGTGGCTAGAAGATGGGAATTTCACATGCCCTGTAACGAATCAGATTCTCTCAAGCTTCGATCTTGTTCCAAATCGCTCGCTTAGGATTTCGATTCAAGAATGGTGTGTTGATAATCGCCGATTTGGGATCGAGAGAATTCCTACTCCAAGAATTCCTGTTAGTTCATCACAAATAGAAGATACTATTCTTCATCTTAGAGAATCATCTTCACGTTTGGATCGGTATGGTTTTCTTCAAGTTTTACAGAGAATCAATTTATGGGGTTCAGAGAGTGAGAGAAATAAAAGGTGTATTGTTGAAAATGGTACATCTTGTGAATTAGCTTCTGCATTATGTGAATTTGCTAATGATTCCATTGAGGAAAATGTGAGTGTTCTTGAGGAGATTTTGAATTCCCTTAATTGGATGTTTCCACTTCAATTTGAAGCAAAAAAAGTTTTAAGATCTTCAGATGCCTTGAGATGTTTGGTTTGGTTTTTGAAGAATCAAGATCTTTCTGGGAAACAGAATTCAATTGTTGCTTTGAGAGAGATCCTTTCTTCTGGTGATGAGCAGACTTTTGAGACTTTGGCAGAAATTGAAGGGACCATTGAGATATTAGCTGAGTTCATTAACAAGAGGATTAACCCAACAATCACAAAAGCTTCAATGGTAATTGTTTATTACTTGATTTCATCTTCTTATCCATCTAGTGAGAAGGTGAAGCTGCAACTCATAGGCCTTGGTTTGATCTCTTCACTTTTGGAGATCCTAATTGATTCAGACAAGAGCCTATCAGAGAAGGCTTTAGGTGTTTTTGATTCACTCTGTGACTGTCAAAAAGGAAGAGAAAAGGCTTTCAGTAATGCTCTAACAATTCCTGTTTTGGTGAAGAAGATTTTGAGGGTTTCAGCTTTGGCAACAGATCACTGTGTGTCTGCTATTTGGAAATTATGCAGATATGGATCTAAAGAAGATGATGGTGATGATGAATATGAAGTTGAGGCAGCTCTGACTGAAGCACTCCAAGTTGGTGCATTTCAGAAGCTGCTGGTGGTTTTGCAGGTTGGTTGTGTTGATGAGACAAAGGAGAAAGCAACAGAGCTTCTGAAATTGTTCAATCCTTATAGGGCTGGCTTGGAATGCATGGACTCAGATTTCAAGAATGTAAAGAGATCATTTTGA 1329 0.386 MVLGWNRRKNNKKNKNPNLELVIPNQFICPVSLDLMKDPIILSTGMTYDRDSIDRWLEDGNFTCPVTNQILSSFDLVPNRSLRISIQEWCVDNRRFGIERIPTPRIPVSSSQIEDTILHLRESSSRLDRYGFLQVLQRINLWGSESERNKRCIVENGTSCELASALCEFANDSIEENVSVLEEILNSLNWMFPLQFEAKKVLRSSDALRCLVWFLKNQDLSGKQNSIVALREILSSGDEQTFETLAEIEGTIEILAEFINKRINPTITKASMVIVYYLISSSYPSSEKVKLQLIGLGLISSLLEILIDSDKSLSEKALGVFDSLCDCQKGREKAFSNALTIPVLVKKILRVSALATDHCVSAIWKLCRYGSKEDDGDDEYEVEAALTEALQVGAFQKLLVVLQVGCVDETKEKATELLKLFNPYRAGLECMDSDFKNVKRSF 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3107 442 Pfam U-box domain 23 94 IPR003613 GO:0004842|GO:0016567
Mibi01g3107 442 SUPERFAMILY ARM repeat 175 373 IPR016024 -
Mibi01g3107 442 PANTHER WDSAM1 PROTEIN 20 421 IPR045185 GO:0061630
Mibi01g3107 442 FunFam RING-type E3 ubiquitin transferase 23 94 - -
Mibi01g3107 442 CDD RING-Ubox_PUB 27 69 IPR045210 -
Mibi01g3107 442 SMART Ubox_2 26 89 IPR003613 GO:0004842|GO:0016567
Mibi01g3107 442 SUPERFAMILY RING/U-box 20 99 - -
Mibi01g3107 442 Gene3D - 115 420 IPR011989 -
Mibi01g3107 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 97 IPR013083 -
Mibi01g3107 442 ProSiteProfiles U-box domain profile. 22 96 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3107 Mibi-ChrMibi01 54994264 54995592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3107 5 442 U-box Gene Family AT5G37490 38.976 1.46e-101 308