LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi01g3101	ATGGCCGTCGTTCGTCAACGCCGCCAGCTCAACCTCTGTCTTACGCTGCCGGATCCCTCCGACCGCCGCCGCATCTTCCCCCACCCCACCACCACCTCCGCCGCCGCCGACATAACTCTCACCGACGTTGAAAAACTCGAAGTTATCGGCCACGGTAACGGTGGCACCGTCTACAAGGTTCGCCACAAGCGAACATCTTCAATCTACGCACTAAAACTAGTCCACAATAGCTCCGACCCGATAACCCGCCGCCAAACCCGCCGAGAAATTGACATCCTCCGCCGTACGGACTCACCATACATCGTACAATTCATCGGCTTCTCCGAAAATTCCTCCGGCGACATAGCGATTTTACTAGAGTACATGGACTTAGGTACACTAGATACTCTCTTGAAGAAAAACGGCACCTTTTCTGAATCCCAACTCGCCACGGTGGCGCGTCAAGTTCTCGCTGGGCTTAGCTACCTCCACGCGAACAAGATCGTCCACCGCGATATCAAGCCGGCGAATCTTCTGGTTAATCGGAGAATGGAAGTGAAGATAAGTGATTTTGGGGTTAGTAAGGTGATGTGTCGGACGTTGGACGCGTGTCATTCTTATGTTGGCACGTGCGCGTATATGAGCCCGGAGCGGTTCGACCCGGATAGGTATGGGGGGAATTATGACGGGTATTCGGGTGATATATGGAGTTTGGGTCTTACGTTGTTTGAACTCTATGTGGGTCGTTTTCCGTTTCTTCAGGAGGGTCAGAGGCCTGATTGGGCCACGTTGATGTGGGCCATTTGTTTCGGTGATCCGCCGGAGTTACCGGAGAGTGCGTCCGGTGAGTTTCGGAGTTTTGTTGAGTGTTGCTTGAAGAAGGAATCGAATGAGAGGTGGACGGCTTCTCAGCTTATGGCCCACCCGTTTCTATGCCAACAATAA	924	0.5303	MAVVRQRRQLNLCLTLPDPSDRRRIFPHPTTTSAAADITLTDVEKLEVIGHGNGGTVYKVRHKRTSSIYALKLVHNSSDPITRRQTRREIDILRRTDSPYIVQFIGFSENSSGDIAILLEYMDLGTLDTLLKKNGTFSESQLATVARQVLAGLSYLHANKIVHRDIKPANLLVNRRMEVKISDFGVSKVMCRTLDACHSYVGTCAYMSPERFDPDRYGGNYDGYSGDIWSLGLTLFELYVGRFPFLQEGQRPDWATLMWAICFGDPPELPESASGEFRSFVECCLKKESNERWTASQLMAHPFLCQQ	307

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi01g3101	307	ProSitePatterns	Protein kinases ATP-binding region signature.	49	72	IPR017441	GO:0005524
	Mibi01g3101	307	CDD	PKc_MAPKK_plant_like	42	304	-	-
	Mibi01g3101	307	SMART	serkin_6	43	304	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi01g3101	307	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	31	306	-	-
	Mibi01g3101	307	Gene3D	Transferase(Phosphotransferase) domain 1	125	307	-	-
	Mibi01g3101	307	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	161	173	IPR008271	GO:0004672\|GO:0006468
	Mibi01g3101	307	ProSiteProfiles	Protein kinase domain profile.	43	304	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi01g3101	307	FunFam	Mitogen-activated protein kinase 2	124	307	-	-
	Mibi01g3101	307	SUPERFAMILY	Protein kinase-like (PK-like)	44	305	IPR011009	-
	Mibi01g3101	307	PIRSF	ILK	24	301	-	-
	Mibi01g3101	307	Gene3D	Phosphorylase Kinase; domain 1	15	123	-	-
	Mibi01g3101	307	Pfam	Protein kinase domain	44	304	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi01g3101	Mibi-ChrMibi01	54951616	54952539	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi01g3101	1	304	MAP Kinase Kinase Gene Family	AT1G73500	62.136	1.02e-129	370

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Mibi01g3101		Pkinase	1.6e-65	CL0016