Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3082 ATGGCGACGGAGCAGTTAATGTCCGGTGGCGGCGGCCATCGCTACCTTCAAATGCAATCGGAGCCGCCGTCGACGGCGATTTCTTCTTCTGCTTCACTCCGCTTTGGCGGTGGCTCTGAGCATGCTCGAATTTTCGATGAGTTGCCAGAAGCCACAATCGTCTCCGTTTCTCGTCCCGATGCCGGCGATATCAGCCCTATGCTCCTCTCTTACACCATCGAATTTCGTTACAAACAGTTCAAGTGGCGATTGTTGAAGAAGGCTTCTCACGTATTTTATTTGCATTTTACATTGAAGAAGCGTGCCTTTATTGAGGAAATTCATGACAAGCAAGAGCAGGTTAAAGAATGGCTTAACAATCTAGGAATCGGAGAACACACTTCGGTGGTGCAAGATGATGATGAAGGTGATGAAGAAACTGTTCATCTACACCATGAAGAAAGTGCTAAGGACAGAGATGTCCCCTCCAGTGCTGCTCTACCAATTATAAGGCCAGCCTTAGGAAGGCAAGATACTATGTCAGACAGAGCAAAGACTGCGATGCAAGGATATTTGAATCACTTTTTAGGAAATATCAATATTGTTAACTCTCCAGAGGTTTGCAAGTTTTTGGAGGTATCAAAGTTATCTTTCACAACTGAGTATGGCCCTAGCCTAAAGGAAGATTATGTTATGGTGAAGCATCTTCCAACAATTTCTAAGGATGATAATTCCAGAAAGTGTTGTTTATCTCGGTGTTTTAGTTGCTGCAATGACAACTGGCCAAAGGTTTGGGCTGTTCTAAAACCTGGATTCTTAGCATTGCTGGCTGATCCATTTGATAGCCAACCTTTGGACATAATTGTTTTTGATGTTCTTCCTGCCTCGGATGGGAATGGGGATGGTCGTTTATCACTGGCAAAAGAAATAAAAGAACGAAATCCTTTACGACATTCATTCAAGGTGACTTGTGGAAACCGGAGCATTAGTATAAGAGTAAAAAGTAGTGGTAAAGTCAAAGATTGGGTTGCTGCAATTAATGACGCTGGACTCAGGCCTCCTGAAGGATGGTGTCATCCTCATCGCTATGGTTCATTTGCTCCTCCAAGAGGCTTGATTGAAGATGGAAGTCAGGCCCAGTGGTTTGTTGATGGCAGGGCAGCATTTGAGGCCATTGCTGCTTCAATTGAGGATGCAAAATCAGAGATATTTATTTGTGGGTGGTGGGTTTGCCCGGAACTGTACTTGCGGCGTCCTTTTCATACTCATGCTTCATCAAGACTTGATAATTTGCTGGAAGCAAAAGCTAAGCAAGGGGTTCAGATCTACATTCTTCTCTATAAAGAGGTGGCTCTTGCTTTGAAAATTAACAGTGTCTATAGCAAGAGAAAGCTTCTTAGCATTCATGAAAATGTGAGGGTACTACGCTATCCTGACCACTTTTCTTCTGGTGTTTATCTGTGGTCACACCATGAAAAACTGGTCATTGTTGATCACCAGATTTGTTTTATTGGAGGATTGGATTTATGCTTTGGTCGCTATGATACATCTGAACACACGGTAGGAGATTCCCCTCCCCTGATATGGCCAGGAAAGGACTATTATAACCCTAGGGAGTCGGAGCCAAATTCTTGGGAAGATGCAATGAAAGATGAATTGGATCGTGTAAGATATCCGCGAATGCCATGGCATGATGTTCATTGTGCCCTTTGGGGACCACCTTGTCGTGACATTGCTAGGCATTTTGTTCAGCGATGGAATTATGCAAAGAGGAACAAAGCTCCAAATGAGCAAACAATTCCATTACTTATGCCCCAGCATCATATGGTTATCCCACACTACTTGGGAAGAAGCAAAGAGATGGAAACTGAAAGCAAGAATATTGACCATCATATAGGCATGAAGAGGGAAGATTCCTTTTCCTCATTCCAAGACGTTCCTCTACTTTTACCTGAAGACTCAGGTGGGATGGATGCTCCTGTAGGAGACACTGCATTAAATGAGTTAAGCTCCTTTTTACATCATCTTGACAAGCAAACCAGGGTCAGCAGCGGCCGTCCTTTTTCTTTCCGGAAGGCCAAAATTAAACCAATAGATCAAGATACACCAATGAAGGGCTTTGTAGATGATCTTGACTATGTGGATCATCATGACAAGATGCCTATGGATAGAGCATCTCACATAAGTGTACGTAATTCAGGTCCAGAATGGTGGGAGACACAAGAACGAGGTGACCAGGGAAGTTTTGCAGATGAATCTGGCCAAGTTGGTCCTCGTGTATCCTGCCGTTGTCAGGTTATTCGGAGTATTAGTCAATGGTCTGCTGGAACTAGCCAAACAGAAGATAGTATCCACAATGCTTATTGCTCTCTAATTGAGAAAGCAGAACACTTCATCTACATTGAGAATCAATTTTTTATATCAGGTCTTTCAGGAGATGAGATGATACGAAATCGTGTCTTGGAAGCTTTATATCGACGGATTATGCGAGCTTACCATGACAAAAAATCTTTTAGGGTTATAATTGTCATACCACTCCTGCCTGGCTTTCAGGGAGGCCTGGACGATAGTGGTGCAGCATCCGTCAGAGCAATAATGCATTGGCAGTATCGAACCATTTGCAGAGGACAAAACTCCATATTACATAATCTGTTAGAGTTTCTTGGTTCAAAAATACATGATTACATCTCTTTCTATGGCCTTAGGGCTTATGGTAGACTCTTTGATGGTGGTCCTGTGGCAACCAGCCAGGTGTATGTTCACAGTAAAATCATGATTGTTGATGACTGTACAACTTTGATTGGATCTGCTAATATTAATGATAGGAGTTTACTTGGCTCCAGAGACTCAGAGATCGGTGTAATTATAGAAGACAAAGAATCGATTGATTCGTTTATGGGTGGAAAGTCATGGAAAGCCGGAAAATTCTCTCTAACTCTGCGGTTGTCATTATGGTCTGAACACTTAGGTCTGCAAGCAGGGGAGATGGATCGAATAATGGACCCAGTTGCTGAGTCGACATATAGGGATATTTGGATGGCAACAGCAAAGACAAATACTGCAGTTTATCAGGATGTCTTTTCTTGCGTACCTAATGATCTGATACACACCAGACTTGCTTTCAGGCAAAGCACAGTTCTCTGGAAAGAAAGAATTGGCCATACTACCATTGACTTGGGAATAGCCCCAGAAAATTTAGAATCCTATCATGATGGAGGTATAAAAAAAACTGACCCTTTGGAAAGATTGGCATCAGTGAAAGGTCATCTTGTTTCCTTCCCCTTGGAGTTCATGTGTCAAGAAAATCTAAGACCTGCTTTTAATGAAAGCGAATATTATGCTACTCAGGTTTTCCACTAA 3339 0.4265 MATEQLMSGGGGHRYLQMQSEPPSTAISSSASLRFGGGSEHARIFDELPEATIVSVSRPDAGDISPMLLSYTIEFRYKQFKWRLLKKASHVFYLHFTLKKRAFIEEIHDKQEQVKEWLNNLGIGEHTSVVQDDDEGDEETVHLHHEESAKDRDVPSSAALPIIRPALGRQDTMSDRAKTAMQGYLNHFLGNINIVNSPEVCKFLEVSKLSFTTEYGPSLKEDYVMVKHLPTISKDDNSRKCCLSRCFSCCNDNWPKVWAVLKPGFLALLADPFDSQPLDIIVFDVLPASDGNGDGRLSLAKEIKERNPLRHSFKVTCGNRSISIRVKSSGKVKDWVAAINDAGLRPPEGWCHPHRYGSFAPPRGLIEDGSQAQWFVDGRAAFEAIAASIEDAKSEIFICGWWVCPELYLRRPFHTHASSRLDNLLEAKAKQGVQIYILLYKEVALALKINSVYSKRKLLSIHENVRVLRYPDHFSSGVYLWSHHEKLVIVDHQICFIGGLDLCFGRYDTSEHTVGDSPPLIWPGKDYYNPRESEPNSWEDAMKDELDRVRYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPNEQTIPLLMPQHHMVIPHYLGRSKEMETESKNIDHHIGMKREDSFSSFQDVPLLLPEDSGGMDAPVGDTALNELSSFLHHLDKQTRVSSGRPFSFRKAKIKPIDQDTPMKGFVDDLDYVDHHDKMPMDRASHISVRNSGPEWWETQERGDQGSFADESGQVGPRVSCRCQVIRSISQWSAGTSQTEDSIHNAYCSLIEKAEHFIYIENQFFISGLSGDEMIRNRVLEALYRRIMRAYHDKKSFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLLEFLGSKIHDYISFYGLRAYGRLFDGGPVATSQVYVHSKIMIVDDCTTLIGSANINDRSLLGSRDSEIGVIIEDKESIDSFMGGKSWKAGKFSLTLRLSLWSEHLGLQAGEMDRIMDPVAESTYRDIWMATAKTNTAVYQDVFSCVPNDLIHTRLAFRQSTVLWKERIGHTTIDLGIAPENLESYHDGGIKKTDPLERLASVKGHLVSFPLEFMCQENLRPAFNESEYYATQVFH 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3082 1112 PIRSF PLD_euk 56 621 IPR016555 GO:0004630|GO:0006654|GO:0048017
Mibi01g3082 1112 PIRSF PLD_euk 605 1112 IPR016555 GO:0004630|GO:0006654|GO:0048017
Mibi01g3082 1112 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 479 506 IPR001736 GO:0003824
Mibi01g3082 1112 CDD PH_PLD 195 342 - -
Mibi01g3082 1112 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 909 936 IPR001736 GO:0003824
Mibi01g3082 1112 Pfam PLD-like domain 782 957 IPR025202 -
Mibi01g3082 1112 FunFam Phospholipase 743 963 - -
Mibi01g3082 1112 Gene3D Endonuclease Chain A 704 970 - -
Mibi01g3082 1112 SUPERFAMILY PH domain-like 250 342 - -
Mibi01g3082 1112 Gene3D - 244 344 IPR011993 -
Mibi01g3082 1112 SMART pld_4 909 936 IPR001736 GO:0003824
Mibi01g3082 1112 SMART pld_4 479 506 IPR001736 GO:0003824
Mibi01g3082 1112 Coils Coil 100 120 - -
Mibi01g3082 1112 PANTHER PHOSPHOLIPASE D 177 1102 IPR015679 -
Mibi01g3082 1112 MobiDBLite consensus disorder prediction 1 21 - -
Mibi01g3082 1112 CDD PLDc_vPLD1_2_yPLD_like_2 769 953 - -
Mibi01g3082 1112 Gene3D Endonuclease Chain A 366 603 - -
Mibi01g3082 1112 Pfam Phospholipase D Active site motif 479 506 IPR001736 GO:0003824
Mibi01g3082 1112 SUPERFAMILY Phospholipase D/nuclease 327 599 - -
Mibi01g3082 1112 SMART PH_update 218 346 IPR001849 -
Mibi01g3082 1112 CDD PLDc_vPLD1_2_yPLD_like_1 372 516 - -
Mibi01g3082 1112 SUPERFAMILY Phospholipase D/nuclease 750 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3082 Mibi-ChrMibi01 54610212 54621647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3082 1 989 Phospholipase D Gene Family (Wang group) AT3G16785 72.362 0.0 1402