Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3059 ATGGTTGCGGCTGTTGCTCGTATCACCTTCACTGTATCTGTATCTGTATCTGTTGGATCACTAAGTGCTTCATTGATTAGGAATTTCCCATTTCCCATTTCACATTTCCTTGCTCTGAGTTCTGTTCAGATCTTGGAAATGATGGCCGATCTGAGTGGAAAGGTGAGTGATCACGAGTTCATCGGATCGGAGGCAGAGGACACCAATAACAGAAACCCTAACGCAGATTCATCGCAAGAAACTCCAATGAGCAACGAGCAGAAGAAAACATGCGCCGATTGTGGCACATCGAAAACCCCTCTTTGGAGAGGTGGTCCCGCCGGTCCCAAGTCTCTGTGTAACGCTTGTGGGATCAGGAGCAGGAAGAAGAAGAGGGCGATTTTGGGAATGAACAAGGGAAGTAATGAAGAGAAGAAGGGCAAAAGGGGAAACAATAGTGCTAAGATTGGGGAGAGTTTGAAGCAGAGGTTAATGGCTCTTGGAAGGGAGGTTTTGATGCAGAGATCCACAATGGAGAGGCAGAGGAAGAAGCTGGGTGAGGAAGAACAAGCGGCTGTGTTGTTGATGGCTCTTTCTTATGGCTCTGTTTATGCTTAA 597 0.4707 MVAAVARITFTVSVSVSVGSLSASLIRNFPFPISHFLALSSVQILEMMADLSGKVSDHEFIGSEAEDTNNRNPNADSSQETPMSNEQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGMNKGSNEEKKGKRGNNSAKIGESLKQRLMALGREVLMQRSTMERQRKKLGEEEQAAVLLMALSYGSVYA 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3059 198 SMART GATA_3 85 135 IPR000679 GO:0006355|GO:0043565
Mibi01g3059 198 Gene3D - 85 149 IPR013088 GO:0006355|GO:0008270
Mibi01g3059 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 83 125 - -
Mibi01g3059 198 ProSitePatterns GATA-type zinc finger domain. 91 116 IPR000679 GO:0006355|GO:0043565
Mibi01g3059 198 ProSiteProfiles GATA-type zinc finger domain profile. 85 121 IPR000679 GO:0006355|GO:0043565
Mibi01g3059 198 Pfam GATA zinc finger 91 125 IPR000679 GO:0006355|GO:0043565
Mibi01g3059 198 MobiDBLite consensus disorder prediction 63 89 - -
Mibi01g3059 198 PANTHER OS01G0976800 PROTEIN 64 198 - -
Mibi01g3059 198 MobiDBLite consensus disorder prediction 66 89 - -
Mibi01g3059 198 CDD ZnF_GATA 90 125 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3059 Mibi-ChrMibi01 54217086 54217979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3059 48 198 C2C2-Gata Transcription Factor Family AT3G06740 61.438 8.96e-53 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi01g3059 GATA 2.4e-16 CL0167