Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3058 ATGAATCCCGCGCTTTTGTTGGATTTTGGCGCGAGGGAGGGAAGAGGGGGCAATTTGATTTTGCTCAGCTTGCGCCTCTTGCGCGTGTGTCTCCTCCACCTCTCTCTCTCTCTCCTCATCTCTCTCACTGCATGCTCCTTCATCACTCCATTTCTGATCTCCATTCCCAACCCACTCCTCCTTCTTCACCTTCACCTTCATTCAGTAAATAGGAATTCCCTGCCTATTTCCTCTTGCACGGTTCAGATCTTGGTAATGATGGTCGATCTGAGTGGAAAAGGATCGGAGGAGGCAGAGGACACCAATAACAGAAGCCCTAACGCAGATTCATCCCAAGATATCCCAATGAGCGGCGACCAGAAGAAAACATGCGCCGATTGTGGCACATCAAAAACTCCTCTCTGGAGAGGTGGTCCCGCCGGTCCCAAGTCTCTGTGTAACGCTTGTGGGATCAGGAGCAGGAAGAAGAAGAGGGCGATTTTGGGCATGAATAAGGGAATTAATGAGGAGAGGAAGGGCAAAAGGGGAAATAGCAATGCTAAGATTGGGGAAAGTTTAAAGCAGAGGTTGATGGCTCTGGGAAGGGAGGTTTTGATGCAGAGATCAACGGTGGAGAGGCAGAGGAAGAAGCTGGGAGAGGAAGAACAAGCCGCTGTGTTGTTGATGGCCCTCTCTTATGGCTCTGTTTATGCTTAA 696 0.5 MNPALLLDFGAREGRGGNLILLSLRLLRVCLLHLSLSLLISLTACSFITPFLISIPNPLLLLHLHLHSVNRNSLPISSCTVQILVMMVDLSGKGSEEAEDTNNRSPNADSSQDIPMSGDQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGMNKGINEERKGKRGNSNAKIGESLKQRLMALGREVLMQRSTVERQRKKLGEEEQAAVLLMALSYGSVYA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3058 231 Pfam GATA zinc finger 124 158 IPR000679 GO:0006355|GO:0043565
Mibi01g3058 231 ProSitePatterns GATA-type zinc finger domain. 124 149 IPR000679 GO:0006355|GO:0043565
Mibi01g3058 231 MobiDBLite consensus disorder prediction 104 122 - -
Mibi01g3058 231 ProSiteProfiles GATA-type zinc finger domain profile. 118 154 IPR000679 GO:0006355|GO:0043565
Mibi01g3058 231 MobiDBLite consensus disorder prediction 95 122 - -
Mibi01g3058 231 PANTHER OS01G0976800 PROTEIN 88 231 - -
Mibi01g3058 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 116 158 - -
Mibi01g3058 231 Gene3D - 119 182 IPR013088 GO:0006355|GO:0008270
Mibi01g3058 231 SMART GATA_3 118 168 IPR000679 GO:0006355|GO:0043565
Mibi01g3058 231 CDD ZnF_GATA 123 158 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3058 Mibi-ChrMibi01 54210262 54211211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3058 119 231 C2C2-Gata Transcription Factor Family AT3G06740 71.304 1.72e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi01g3058 GATA 3e-16 CL0167