Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3020 ATGGCAGGCTCATCATCATTACCCAGAAATGTTCTGAAGCCAAAACAACAGAGATTGAAGAAAAGGACAAACTTTGTGACAATCATGAGAAAAGTTCGAGTGACATACACAGACCCTGATGCCACAGATTGTTCGAGTGATGAAGAAGAAGCACGTGGTGGTGTTAATGGTGGATCTTCTTTGGTGATCATCAATGGCTGCAAGCGATCTGTGAGGGAGATTCTTGTTCCCACCAAATCAGCATGCGAATCGGGCATTAAAGCAGTGGTGGGGCCCAGTTTTGTCGGCGGAACTAGCCGCAAACCGTCGGGGTTGCCGAGGGGAGTACGACGTCGTAAATGGGGTACCTATGTGGCAGAGATACGAGACCCATTTAACAGGGAACGAGTATGGCTAGGGACTTACGATAATGTGGAAGCTGCTGCTGCTGCTTATGAAAACAAGAGGAAGAAGTTTGAAATCATGATTTTTGAATCCCTTTCATCTCCATCTTCAGTGCTAGACGTCACTCCAAATAATAACAATGACAATGGCAATAATAATAATAATAATGTTAATGTTAATGTTATTAACAATTCATTGGCTAGTAGTGACAGTGATGGTTCTTCTGTGAGGGAGATAAATGAGCAATGTTCTGAGCAGGAGGGGGAATGGTACATTCAGCAGCTGTTAGAGGAGCCAATTGTGCCATCTTTGGAGGCTGATGATGACATGGTGTTTTTTGCTGGTGATAATGGATCTGATGGTAGTAATTTGGTCATTAATAATTGTAATGATAATGGAGGTTTGATCTGTGAAGATGGTGGTAATATGGAAGGAGAAGAAGGTGAAGGAGGAATCAATTTTCCAGTATATGTTGAAAGTGATTCTGATGCAGAGTTAAGTTGGATTGATGAAGCTTTCAATGATGAACAATGGCCTTAG 924 0.4221 MAGSSSLPRNVLKPKQQRLKKRTNFVTIMRKVRVTYTDPDATDCSSDEEEARGGVNGGSSLVIINGCKRSVREILVPTKSACESGIKAVVGPSFVGGTSRKPSGLPRGVRRRKWGTYVAEIRDPFNRERVWLGTYDNVEAAAAAYENKRKKFEIMIFESLSSPSSVLDVTPNNNNDNGNNNNNNVNVNVINNSLASSDSDGSSVREINEQCSEQEGEWYIQQLLEEPIVPSLEADDDMVFFAGDNGSDGSNLVINNCNDNGGLICEDGGNMEGEEGEGGINFPVYVESDSDAELSWIDEAFNDEQWP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3020 307 CDD AP2 107 145 IPR001471 GO:0003700|GO:0006355
Mibi01g3020 307 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 152 - -
Mibi01g3020 307 SMART rav1_2 107 164 IPR001471 GO:0003700|GO:0006355
Mibi01g3020 307 Coils Coil 135 155 - -
Mibi01g3020 307 ProSiteProfiles AP2/ERF domain profile. 105 163 IPR001471 GO:0003700|GO:0006355
Mibi01g3020 307 SUPERFAMILY DNA-binding domain 106 151 IPR016177 GO:0003677
Mibi01g3020 307 Pfam AP2 domain 107 153 IPR001471 GO:0003700|GO:0006355
Mibi01g3020 307 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Mibi01g3020 307 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Mibi01g3020 307 Gene3D AP2/ERF domain 107 154 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3020 Mibi-ChrMibi01 53564063 53564986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3020 29 156 AP2-EREBP Transcription Factor Family AT1G68550 38.971 9.34e-20 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi01g3020 AP2 1.1e-09 CL0081