Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3008 ATGCCGCCGGTGAATCTCACGCCTAACGCGATCTCTGCGATTGTCGCCGGCGACGTCAATTCCAAGCCTCTTCTTCAAGTCCTCGACATCAAGTTGCTTTCCAATAACGCTCAACAAGAGAGATATCGTCTTCTCCTTTCCGATTCCGTTTCCTCTCAGCACGCCATGCTCGCCACTCAGTTGAATGACCGTGTCAGAACCGGACGAGTCAAGAAAGGTTCCGTCGTTCAGCTAATCGAGTACATTTGCAGCCAAATTCAGAACCGCAAGATCATTGTAGTGCTCAACATGGAAACTATAATTCCAGACTGTGAGATTATCGGGAATCCAAACTCATCAGTGGAACCTGATTCATCAGCTCAGAAATCATTCTCTAATAACAATTTGCATAACTCATCCAGGTTCAATAGCAATCGCCCGTCTGCTCAAAATTCAAGTCACGGTGAGCAGAATTTCAGACCAACCGTTCAACCTCCTTTCCGACCACCACCAGTTTACAAAAGCCATGGTGCAATTATGAAGAATGAAGCACCTGCACGGATCATTCCTATTGCTGCTTTAAATCCTTATCAAGGCCGGTGGGCTATTAAGGCAAGAGTTACTGCAAAAGGGGATCTCCGCCGCTATAATAATGCTCGCGGAGATGGAAAAGTTTTCTCTTTTGATCTCCTTGACTCTGATGGAGGTGAGATACGAATAACTTGCTTCAATGCTGTTGTTGACCAATTTTTTGATGTAATTGAGGTTGGTAGAGTCTACTTGATATCCAGAGGTAGCTTAAAACCTGCACAGAAGAACTTCAATCATTTAAAGAATGACTGGGAAATTTTCCTGGACTCTAATTCATCTGTGGAGCTTTGCCCAGACGAAGATGCTTCAATACCCAGACAGCAATTCTCCTTCAGGCCTATCAGTGACATTGAGACTGCCGAAAGTAACTGCATACTTGATGTTATTGGGGTTGTGACATCTGTAAATCCCTCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAAAGACGAATTCTGAATGTAAAGGACATGTCTGGCAGGAGTGTTGAGCTAACCCTTTGGGGTGATTTCTGCAAGAGGGATGGTCAAAAGCTTCAAGAGATGGTTGATGGTGGGTTTTTCCCAGTTCTGGCAATCAAATCTGGGAGGGTTAATGACTTTAGTGGAAAATCCATAGGAACCATTTCTTCTTCCCAACTCTTCATTAACCCAGATTTTCCCGAGGCTCAGAGATTAAGGAACTGGTTTGATCAAGGAGGGAAAGATTCAGCTTCTCTGTCTATTACCAAGGACATTGCGCCTGGAGGACCTAAGAATGAGATACGTAAAGCTGTGTCCCAGATCAAGGATGAAGGCCTGGGGCGATCAGATAAGCCAGACTGGATAACGGTGAGGGCAGCCATATCTTATATCAAGACGGATTCATTTTGTTACACAGCTTGCCCACTGATGATCGGAGACCGACAGTGCAATAAAAAAGTGACTAGGTCAGGAGGCAATAGGTGGCAGTGCGATAGATGCAATCAAGATTTTGAGGAGTGTGATTATCGTTACCTTCTTCAAGCCCAAATTCTGGATCACACGGGATTAACTTGGGTCACAGCATTCCAAGAATCGGGCGAGGAAATCTTAGGTTACTCAGCAAAGGAACTGTACTTATTGAAGTATGAAGAGCAGGATGATGATAAGTTTGGGAACATAATCCGTAGTAAACTCTTCAACCAGTTTGTGTTTAAGCTGAAAGTTAAGGAGGAATTGTATGGTGATGAACAGAGGGTGAAGATCACAGTGATCAAGGCAGACAAGGTGGATTATTCTTCAGAGAGTAGATACGTGCTAGATTTGATTTCAAAATTTTGCAGGCGCAAACATGGAATTGAGGAATTGGAAAAAAAGTTGCAGCTCAGACGGAGATGGAGATTGAAATATTACACACAACAGAGTTCATTACTGAATAACAATGCACATGGGACATACATATAA 1998 0.4354 MPPVNLTPNAISAIVAGDVNSKPLLQVLDIKLLSNNAQQERYRLLLSDSVSSQHAMLATQLNDRVRTGRVKKGSVVQLIEYICSQIQNRKIIVVLNMETIIPDCEIIGNPNSSVEPDSSAQKSFSNNNLHNSSRFNSNRPSAQNSSHGEQNFRPTVQPPFRPPPVYKSHGAIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRITCFNAVVDQFFDVIEVGRVYLISRGSLKPAQKNFNHLKNDWEIFLDSNSSVELCPDEDASIPRQQFSFRPISDIETAESNCILDVIGVVTSVNPSVPILRKNGMETQRRILNVKDMSGRSVELTLWGDFCKRDGQKLQEMVDGGFFPVLAIKSGRVNDFSGKSIGTISSSQLFINPDFPEAQRLRNWFDQGGKDSASLSITKDIAPGGPKNEIRKAVSQIKDEGLGRSDKPDWITVRAAISYIKTDSFCYTACPLMIGDRQCNKKVTRSGGNRWQCDRCNQDFEECDYRYLLQAQILDHTGLTWVTAFQESGEEILGYSAKELYLLKYEEQDDDKFGNIIRSKLFNQFVFKLKVKEELYGDEQRVKITVIKADKVDYSSESRYVLDLISKFCRRKHGIEELEKKLQLRRRWRLKYYTQQSSLLNNNAHGTYI 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3008 665 CDD RPA1N 10 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mibi01g3008 665 Pfam Replication protein A OB domain 304 408 IPR031657 -
Mibi01g3008 665 CDD RPA1_DBD_A 183 286 - -
Mibi01g3008 665 PANTHER REPLICATION FACTOR A 1, RFA1 194 602 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mibi01g3008 665 SUPERFAMILY Nucleic acid-binding proteins 447 624 IPR012340 -
Mibi01g3008 665 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 5 623 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mibi01g3008 665 FunFam Replication protein A subunit 5 114 - -
Mibi01g3008 665 FunFam Replication protein A subunit 180 289 - -
Mibi01g3008 665 MobiDBLite consensus disorder prediction 112 153 - -
Mibi01g3008 665 Gene3D - 434 625 IPR012340 -
Mibi01g3008 665 SUPERFAMILY Nucleic acid-binding proteins 4 109 IPR012340 -
Mibi01g3008 665 FunFam Replication protein A subunit 432 624 - -
Mibi01g3008 665 Gene3D - 180 290 IPR012340 -
Mibi01g3008 665 Pfam Replication factor-A protein 1, N-terminal domain 6 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mibi01g3008 665 Pfam OB-fold nucleic acid binding domain 195 267 IPR004365 GO:0003676
Mibi01g3008 665 CDD RPA1_DBD_B 315 422 - -
Mibi01g3008 665 Gene3D - 292 432 IPR012340 -
Mibi01g3008 665 CDD RPA1_DBD_C 450 623 IPR013955 -
Mibi01g3008 665 FunFam Replication protein A subunit 293 431 - -
Mibi01g3008 665 SUPERFAMILY Nucleic acid-binding proteins 298 426 IPR012340 -
Mibi01g3008 665 SUPERFAMILY Nucleic acid-binding proteins 180 294 IPR012340 -
Mibi01g3008 665 MobiDBLite consensus disorder prediction 112 164 - -
Mibi01g3008 665 Pfam Replication factor-A C terminal domain 466 616 IPR013955 -
Mibi01g3008 665 Gene3D - 4 113 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3008 Mibi-ChrMibi01 53490174 53493858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3008 25 623 Core DNA Replication Machinery Family AT2G06510 69.854 0.0 910