Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3007 ATGAGCAAGAAGAGAAAGTTCGTCGCCGATGGTGTTTTCTTCGCCGAGTTGAACGAGGTTTTGACCCGAGAGCTTGCCGAGGATGGATACTCTGGTGTTGAGGTTAGAGTCACACCGATGCGCACTGAGATCATTATCAGAGCCACTCGAACTCAGAATGTGCTTGGTGAGAAGGGTAGGAGAATTAGGGAGTTGACCTCAGTGGTACAGAAGAGATTTAAGTTCCCTGAGAATAGTGTGGAGCTTTATGCTGAGAAGGTGAACAATAGAGGTCTTTGTGCTATTGCTCAGGCCGAGTCTCTCCGCTATAAGCTTCTTGGTGGCCTCGCTGTGAGGAGGGCATGCTATGGTGTTTTAAGATTTGTTATGGAAAGTGGAGCAAAGGGATGTGAGGTCATTGTAAGTGGAAAACTAAGGGCTCAGCGTGCCAAATCCATGAAGTTTAAGGATGGATATATGATTTCATCTGGTCAGCCAGTGAAAGACTATATTGATTCTGCAGTTAGACATGTACTCCTCAGACAGGGGGTTCTTGGTATCAAGGTCAGGATCATGCTTGATTGGGATCCTAAGGGAAAGCAGGGTCCTAAAACTCCCCTTCCTGATATTGTCACAATCCATCCTCCAAAGGAGGAGGAAGAATACATCCGGCCTGCAGCTGTTGTGGCGGTCGATATGGATGTTCCTGTCGCCGCTGTGCCTGTGGCTTAA 711 0.4768 MSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVRIMLDWDPKGKQGPKTPLPDIVTIHPPKEEEEYIRPAAVVAVDMDVPVAAVPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3007 236 CDD 40S_S3_KH 11 91 - -
Mibi01g3007 236 Pfam KH domain 16 89 IPR004044 GO:0003723
Mibi01g3007 236 FunFam 40S ribosomal protein S3 1 88 - -
Mibi01g3007 236 SUPERFAMILY Ribosomal protein S3 C-terminal domain 89 187 IPR036419 -
Mibi01g3007 236 TIGRFAM uS3_euk_arch: ribosomal protein uS3 4 206 IPR005703 GO:0003735|GO:0006412|GO:0015935
Mibi01g3007 236 ProSitePatterns Ribosomal protein S3 signature. 143 179 IPR018280 -
Mibi01g3007 236 Pfam Ribosomal protein S3, C-terminal domain 102 184 IPR001351 GO:0003735|GO:0006412
Mibi01g3007 236 Gene3D - 89 215 IPR036419 -
Mibi01g3007 236 FunFam 40S ribosomal protein S3 89 224 - -
Mibi01g3007 236 ProSiteProfiles Type-2 KH domain profile. 17 88 IPR004044 GO:0003723
Mibi01g3007 236 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 6 95 IPR009019 GO:0003723
Mibi01g3007 236 Gene3D - 1 87 IPR015946 -
Mibi01g3007 236 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3007 Mibi-ChrMibi01 53477615 53480533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3007 1 236 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 84.836 1.72e-150 417