Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2944 ATGTCGGATATACGGAAGTGGTTTATGAAATCCCATACCACGGGCAGTGCTTCGGAGTCCAAGCCCACGAATCAAATGAAGCCTTCTCCAACTAAAACACAAGTGGAAAAAATAGTTGCTGGAGGCCAAGATAGTGCAGGGAAGAGGAAAAACAAAAAAGATGAAAAAGAGGCACAGGAGCTTCCTGCCAAAAGAAAGAATCCCAAGGACGGTGAGGACTTGCAGAAGCCTCTTCCCAAAAAAATTCATTTAGATGATGAAGATGATGACTCTGCCTTGCTCGCATCTAAAAGGAAATCAGTTGATACCACCCCAGCAAAGAAATCGAAGCGTGAATCTGGTAGGGAAATTCCACTGAAGTCTCCTGATATGGAAAATAGTGATGAGGATGATGTTAAAGATGATGTATCAACCATTAAATCTGGTGGAAGGGGACGTGGAGGAAGAGGAGCATCTGCCCAATCATCTAGTGGACGGGGTAGAGGGGGTGGAAGGGGTGGGTTTATGAACTTTGGCGAAAGAAAAGATCCTCCCCACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGATTGCTTGGCTGGTTTGACTTTTGTCATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCGGAAGATTTGATTAAACGCCATGGTGGTCGTGTGACTGGATCAGTCAGCAAAAAAACGAATTATCTTTTATGTGATGAAGATATTGGAGGTCGTAAATCTTCAAAAGCAAAAGAGCTTGGTACAAAGTTTCTCACGGAGGATGGGTTGTTTGACATGATTCGTGCATCAAAACCTGCAAAGGCTCCTCCACAGGAAGAATCAAAAAAATTGGTGAATAAGGTTGTTGCTACCCAGTCAAAAAGTCCTCAGAAAGCTGGAGTCAAGGTCTCCCAACCTTCAGGCTCGGCTTCAGCTCCAGTGAAGCCGAAGACAGAAAGTTCTGTACAATCTTCTTTCATGTGGACAGAGAAGTATCGACCCAAAGTTCCAAATGACATAGTAGGAAATCAGTCCCTTGTTAAACAGCTTCATGATTGGTTAGCACATTGGAATGAACAATTTCTTGACAGTGGAAAGAAAAAGGGAAAAAAGCAAAATGACAGTGGTTCAAAAAAAGCTGTCTTACTTAGTGGAACCCCTGGCATAGGAAAAACCACTTCAGCAAAGTTGGTCTGTAAGATGCTTGGTTTCCAAGCTATAGAGGTTAATGCTAGTGACAGCCGTGGGAAGGCTGATAGCAAAATTGGTAAAGGGATTAGTGGAAGCAATGCAAACTCTATAAAGGAACTTGTAACCAATGAAGCGTTGGATGCTAAGACAGATGGGGCGAAGCATTCGAAAACTGTGCTCATCATGGATGAGGTTGATGGCATGTCAGCAGGTGATCGGGGCGGCATTGCTGATCTTATTGCTAGCATAAAAAAATCAAAAATCCCTATTATCTGCATTTGTAATGACCGCTACAGCCAGAAACTGAAAAGTCTTGTGAACTACTGTCTGCTGCTTAGCTTTCGTAAACCTACAAAGCAGCAGATGGCAAAGAGGTTGTTGCAAATTGCGAAAGCTGAAGGGCTTCAAGTTAATGAGATTGCTCTTGAGGAGCTAGCCGAAAGAGTTAATGGAGATATGCGCATGGCGCTAAATCAGTTACACTATATGAGCCTCTCCATGTCTGTTATTAACTATGATGACATCAGGCAACGCCTTTTATCTAGCTCAAAAGATGAGGACATGTCACCGTTCACTGCAGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTAAAAATGGACGAGAGGATTAATCTTAGCATGAGTGATCCTGACCTTGTTCCTCTTCTTATTCAGGAAAATTATATTAATTATAGACCAAGTTTGGCTACCAAAGATGACAATGATATGAAGCGCATGAAGTTAATTGCCCGTGCTGCTGAGTCTATTGCTGATGGAGATATAGTGAATGTACAGATTCGAAGATATCGACAGTGGCAGCTCTCTCAAGCTAGTACTCTTGCATCGAGTATAATTCCTGCTTCATTGTTGCATGGGCAAAGAGAAATCCTTGAACAGGGAGAACGGAATTATAATCGGTTTGGTGGTTGGCTGGGTAAAAATTCAACAATGGGCAAAAACTATAGGCTTTTGGAAGATATGCGTGTTCACATTCTTGCTTCTCGTGAACCCTGTCCAGGAAGGGAAACCCTCCGTTTGGATTATCTTAAACCACTTCTTCAGCAGTTAACAGAACCATTGCGGGCCTTGCCTAAGGATGAAGCTGTTCAGAAAGTTGTGGAATTTATGAACATGTACTCAATCAGCCAAGAGGATTTTGATACTGTTGTCGAACTATCAAAATTCAAGGGTCGTCCAAATCCGCTAGATGGCATTGCGCCTGCTGTTAAATCTGCACTGACAAAAGCTTACAAAGAAGAAAGCAAGTGTAGGATGGTTCGAGCTGCAGATCTAGTCACTATTCCTGGAATGAAAAAGCCTGTTAAGAAGCGAGTTGCTGCTATCCTAGAACCATCTGACGAAGGACTGGAACAGGGTGAAGGTGGGGCCCTGGAAGAGAGTGAAGAAGAGGATTCCTCAGACACAGAGGAATTAGAAGGTACCACCACTGGTGAGAAGCTGCAGTCAGCACTTCAAAGTTTAAATTCAAAGGCCATGCAAGTACAATTGGATTTGAAGGGAACAGGAAGCTCAAGTGCCAAGAAGTCACCAGCTGGAAGAGGTAGAGGTGGTTCTGCTTCGGCCGTGAGGGGTGGTCAAGCTTCAAGAGGTGGGGCGAAAAGAAAGAGGTGA 2820 0.4355 MSDIRKWFMKSHTTGSASESKPTNQMKPSPTKTQVEKIVAGGQDSAGKRKNKKDEKEAQELPAKRKNPKDGEDLQKPLPKKIHLDDEDDDSALLASKRKSVDTTPAKKSKRESGREIPLKSPDMENSDEDDVKDDVSTIKSGGRGRGGRGASAQSSSGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTKFLTEDGLFDMIRASKPAKAPPQEESKKLVNKVVATQSKSPQKAGVKVSQPSGSASAPVKPKTESSVQSSFMWTEKYRPKVPNDIVGNQSLVKQLHDWLAHWNEQFLDSGKKKGKKQNDSGSKKAVLLSGTPGIGKTTSAKLVCKMLGFQAIEVNASDSRGKADSKIGKGISGSNANSIKELVTNEALDAKTDGAKHSKTVLIMDEVDGMSAGDRGGIADLIASIKKSKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLLQIAKAEGLQVNEIALEELAERVNGDMRMALNQLHYMSLSMSVINYDDIRQRLLSSSKDEDMSPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLLIQENYINYRPSLATKDDNDMKRMKLIARAAESIADGDIVNVQIRRYRQWQLSQASTLASSIIPASLLHGQREILEQGERNYNRFGGWLGKNSTMGKNYRLLEDMRVHILASREPCPGRETLRLDYLKPLLQQLTEPLRALPKDEAVQKVVEFMNMYSISQEDFDTVVELSKFKGRPNPLDGIAPAVKSALTKAYKEESKCRMVRAADLVTIPGMKKPVKKRVAAILEPSDEGLEQGEGGALEESEEEDSSDTEELEGTTTGEKLQSALQSLNSKAMQVQLDLKGTGSSSAKKSPAGRGRGGSASAVRGGQASRGGAKRKR 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2944 939 MobiDBLite consensus disorder prediction 288 318 - -
Mibi01g2944 939 MobiDBLite consensus disorder prediction 46 140 - -
Mibi01g2944 939 FunFam Replication factor C subunit 1 512 583 - -
Mibi01g2944 939 CDD BRCT_RFC1 188 266 - -
Mibi01g2944 939 Pfam Replication factor RFC1 C terminal domain 652 814 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Mibi01g2944 939 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 324 572 IPR027417 -
Mibi01g2944 939 SUPERFAMILY post-AAA+ oligomerization domain-like 583 728 IPR008921 GO:0003677|GO:0006260
Mibi01g2944 939 MobiDBLite consensus disorder prediction 855 874 - -
Mibi01g2944 939 FunFam Replication factor C subunit 1 584 693 - -
Mibi01g2944 939 Gene3D - 584 693 - -
Mibi01g2944 939 Gene3D - 512 582 - -
Mibi01g2944 939 CDD AAA 372 512 - -
Mibi01g2944 939 MobiDBLite consensus disorder prediction 7 38 - -
Mibi01g2944 939 SUPERFAMILY BRCT domain 188 269 IPR036420 -
Mibi01g2944 939 Gene3D - 324 511 IPR027417 -
Mibi01g2944 939 MobiDBLite consensus disorder prediction 1 191 - -
Mibi01g2944 939 SMART AAA_5 375 513 IPR003593 -
Mibi01g2944 939 SMART BRCT_7 190 268 IPR001357 -
Mibi01g2944 939 FunFam Replication factor C subunit 1 324 511 - -
Mibi01g2944 939 Pfam ATPase family associated with various cellular activities (AAA) 379 491 IPR003959 GO:0005524|GO:0016887
Mibi01g2944 939 Gene3D BRCT domain 165 267 IPR036420 -
Mibi01g2944 939 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 18 911 - -
Mibi01g2944 939 ProSiteProfiles BRCT domain profile. 188 269 IPR001357 -
Mibi01g2944 939 MobiDBLite consensus disorder prediction 878 911 - -
Mibi01g2944 939 MobiDBLite consensus disorder prediction 845 939 - -
Mibi01g2944 939 PIRSF RFC1 2 914 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Mibi01g2944 939 CDD HLD_clamp_RFC 512 570 - -
Mibi01g2944 939 Pfam BRCA1 C Terminus (BRCT) domain 190 265 IPR001357 -
Mibi01g2944 939 MobiDBLite consensus disorder prediction 172 187 - -
Mibi01g2944 939 FunFam Replication factor C subunit 1 164 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2944 Mibi-ChrMibi01 52629626 52636496 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2944 1 893 Core DNA Replication Machinery Family AT5G22010 67.541 0.0 1108