Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi01g2929 | ATGGAGCGGTACGGACGGACAAGTGAAGGCTCGCAGTCTGATCCCTCACCGGAATGGACAGCCGAAACAGCAGGCCTTGAAGAGTCAGTTTGGCAATTGGAATTGGGTGGTGGTGAATCGTACCCTCAACGTCCTGATGAGGCTGATTGTATCTACTATTTGAGGACTGGTTTTTGTGGGTACGGCCCACGATGTCGGTTCAATCATCCCCGAGACCGTGGCGCGGTTATTGGAGCTGCGAGGATTGGAGGGGAGTTCCCAGAACGAGCAGGCCAGCCTGTATGCCAGTATTATATGAGGACAGGATCTTGCAAATTTGGTCCGTCCTGCAAGTATCATCATCCTAGGCAGGGAGGAGGCACTGTTAGCCCTGTGCCACTAAATTATTATGGGTTCCCAATGCGACCGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTCGGCGCAACTTGTAAATTCCACCACCCGCAGCCAGAAGGCATGCCAATTCCAGCACAAACGCCAGTTCCCCCAGTTTCACCTCTACCTGTGCGAGTACCTTCACCAATGTATCCAACTGTACAGCCTCCATCTGGCCCTCCATCATCACAATATGGTGTAATGGTAGCATCTCCTAGGCCACCTCTGCTACCTGGCTCATTAGTCCATAGTCCCTATGGGCATGTGGTTTTGTCCCCGGCTGTAGTCCCTTTTCCAGGTTGGAATCCTTATCAGCCTCCTGCAAACCCCTTAGTTCCCTCAAGTACTCCATCTAATGTTGGGTCGGCACATATTTATGGGATAGGCCAGCTGCCTTCACCAGCTTCAACTTATACTGGACAGTATCAACCTTCAGGCTCCTCAGTTGGTCCTTCAGGCAGTAGTCAGAAGGAACACTCATTTCCAGAAAGACCTGGTCAGCCAGAATGTCAGTATTATATGAAAACGGGGGAGTGTAAATTTGGTCCATCATGTAGATATCATCATCCACCTGAATTGGTAGCTCCAAAACCAAATGTGGTCCTTAGTCCTGTGGGCCTTCCTTTGCGTCCGGGTGCACCTCCTTGCACTCATTATGCGCAGCGTGGGGTGTGCAAATTTGGTCCAGCATGCAAATTTGATCATCCTATTGGAGCATTGAGTTACAGTCCATCTGCATCCTCCCTAGCTGATATGCCGGTTGCACCATATCCTGTGGGCTCATCAATTGGCACACTTGCTCCATCATCTTCATCATCAGAATTGCGACCAGAACTCACCTCAGGATCTGGCAAGGAGTCTGCATCATCCAGAATATCTTCGTCAATGAGCTCATCAACGGCATCTGTTGGCTTGACCTTGTCATCTGGTGGGTCCATTTCTCAATCAACTGCTCAACAATCTGCTCAGAGTTCCAGTCCTTCAGCAACCACAAATAACACCACAAGCAGCTCCGTCCCCCACACCTCTAGTTAA | 1449 | 0.4997 | MERYGRTSEGSQSDPSPEWTAETAGLEESVWQLELGGGESYPQRPDEADCIYYLRTGFCGYGPRCRFNHPRDRGAVIGAARIGGEFPERAGQPVCQYYMRTGSCKFGPSCKYHHPRQGGGTVSPVPLNYYGFPMRPGEKECSYYVKTGQCKFGATCKFHHPQPEGMPIPAQTPVPPVSPLPVRVPSPMYPTVQPPSGPPSSQYGVMVASPRPPLLPGSLVHSPYGHVVLSPAVVPFPGWNPYQPPANPLVPSSTPSNVGSAHIYGIGQLPSPASTYTGQYQPSGSSVGPSGSSQKEHSFPERPGQPECQYYMKTGECKFGPSCRYHHPPELVAPKPNVVLSPVGLPLRPGAPPCTHYAQRGVCKFGPACKFDHPIGALSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELTSGSGKESASSRISSSMSSSTASVGLTLSSGGSISQSTAQQSAQSSSPSATTNNTTSSSVPHTSS | 482 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi01g2929 | 482 | ProSiteProfiles | Zinc finger C3H1-type profile. | 348 | 376 | IPR000571 | GO:0046872 | |
| Mibi01g2929 | 482 | SUPERFAMILY | CCCH zinc finger | 352 | 378 | IPR036855 | GO:0046872 | |
| Mibi01g2929 | 482 | FunFam | CCCH type zinc finger protein | 300 | 385 | - | - | |
| Mibi01g2929 | 482 | ProSiteProfiles | Zinc finger C3H1-type profile. | 44 | 72 | IPR000571 | GO:0046872 | |
| Mibi01g2929 | 482 | MobiDBLite | consensus disorder prediction | 274 | 305 | - | - | |
| Mibi01g2929 | 482 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Mibi01g2929 | 482 | ProSiteProfiles | Zinc finger C3H1-type profile. | 89 | 117 | IPR000571 | GO:0046872 | |
| Mibi01g2929 | 482 | Gene3D | - | 123 | 167 | - | - | |
| Mibi01g2929 | 482 | SUPERFAMILY | CCCH zinc finger | 306 | 330 | IPR036855 | GO:0046872 | |
| Mibi01g2929 | 482 | ProSiteProfiles | Zinc finger C3H1-type profile. | 302 | 330 | IPR000571 | GO:0046872 | |
| Mibi01g2929 | 482 | PANTHER | PROTEIN PHOSPHATASE RELATED | 22 | 410 | - | - | |
| Mibi01g2929 | 482 | SUPERFAMILY | CCCH zinc finger | 136 | 164 | IPR036855 | GO:0046872 | |
| Mibi01g2929 | 482 | SUPERFAMILY | CCCH zinc finger | 46 | 72 | IPR036855 | GO:0046872 | |
| Mibi01g2929 | 482 | MobiDBLite | consensus disorder prediction | 274 | 299 | - | - | |
| Mibi01g2929 | 482 | Gene3D | - | 291 | 377 | - | - | |
| Mibi01g2929 | 482 | SMART | c3hfinal6 | 44 | 71 | IPR000571 | GO:0046872 | |
| Mibi01g2929 | 482 | SMART | c3hfinal6 | 302 | 329 | IPR000571 | GO:0046872 | |
| Mibi01g2929 | 482 | SMART | c3hfinal6 | 348 | 375 | IPR000571 | GO:0046872 | |
| Mibi01g2929 | 482 | SMART | c3hfinal6 | 135 | 162 | IPR000571 | GO:0046872 | |
| Mibi01g2929 | 482 | SMART | c3hfinal6 | 89 | 116 | IPR000571 | GO:0046872 | |
| Mibi01g2929 | 482 | MobiDBLite | consensus disorder prediction | 404 | 482 | - | - | |
| Mibi01g2929 | 482 | Gene3D | - | 42 | 121 | - | - | |
| Mibi01g2929 | 482 | SUPERFAMILY | CCCH zinc finger | 92 | 117 | IPR036855 | GO:0046872 | |
| Mibi01g2929 | 482 | ProSiteProfiles | Zinc finger C3H1-type profile. | 135 | 163 | IPR000571 | GO:0046872 | |
| Mibi01g2929 | 482 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 92 | 116 | IPR000571 | GO:0046872 | |
| Mibi01g2929 | 482 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 351 | 374 | IPR000571 | GO:0046872 | |
| Mibi01g2929 | 482 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 46 | 71 | IPR000571 | GO:0046872 | |
| Mibi01g2929 | 482 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 304 | 329 | IPR000571 | GO:0046872 | |
| Mibi01g2929 | 482 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 137 | 162 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi01g2929 | Mibi-ChrMibi01 | 52351010 | 52356156 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi01g2929 | 1 | 436 | C2H2 Transcription Factor Family | AT5G18550 | 56.427 | 4.47e-153 | 442 |
Transcription factors information