Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2922 ATGGCTAGGCAATCCAAACCCCAATCTTCTTCCGACGAATCCACCTCCTCCGAAGAGGAACGTCGTCTCAACGATGCGGAAGATGAGCAAGAGTTGGAAGCTGTGGCTCGCTCTAATGGTAACGATAACGATGATGATGAAGCTGATGCTGCTGCTGCTGGTGGTGCGCCGGATTCTGATGGCGATACGGCTGAGGATGATGGAGATGTTGATCCACAAATTAGCAAGCGTGAGAAGGCCAGGTTAAGAGAAATGCAGAAATTGAAGAAAAAAAAGATTCAGGAGATGTTGGATAAGCAAAATGCTGACATTGATGCGGCTATGAACAATAAAGGTAAGGGGCGCTTGAAGTATCTCCTACAGCAAACTGAGCTGTTTGCACATTTTGCCAAAGGTGATCAAAGTACCTCTCAGAAGAAGTCCAAAGGAAGGGGTCGTCATGCATCTAAAGTAACTGAAGAAGAGGAAGATGAAGAGTACCTCAAAGAAGAAGAAGATGGCTTAGCAGGGAATACACGGTTGGTGACACAACCATCATGTATCCAAGGAAAGATGAGGGATTACCAACTTGCTGGTCTAAACTGGCTTATAAGATTGTATGAGAATGGTATCAATGGAATTCTGGCAGATGAAATGGGGCTTGGTAAAACATTGCAAACCATCTCTTTATTGGGTTATTTGAATGAGTTCAGAGGAATCAAAGGTCCTCATATGGTAGTTGCTCCAAAATCTACACTTGGGAATTGGATGAATGAAATTCGGCGCTTTTGTCCTATTCTGCGTCCAATAAAGTTTCTTGGCAATCCTGATGAAAGGAGACACATCAGAGAGGAGTTATTGGTTGCTGGGAAGTTTGATGTATGTGTTACTAGTTTTGAGATGGCGATCAAGGAGAAGTCTGCGTTTCGTCGGTTTAGTTGGCGCTACATAATTATAGATGAAGCCCATCGAATCAAGAATGAGAATTCTTTACTTTCTAAAACAATGCGGCTATTTAATACAAACTATCGGCTTCTTATCACTGGTACACCTCTCCAGAACAATCTCCATGAGCTCTGGGCTCTTCTCAATTTTCTTCTTCCAGAAATTTTTAGTTCTTCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGTGAAAATGATCAGCAAGAGGTTGTTCAACAACTGCATAAGGTCCTTCGCCCCTTTCTCCTCCGAAGGTTAAAGTCAGATGTTGAGAAGGGTTTGCCACCCAAAAAAGAAACCATTCTCAAAGTAGGAATGTCACAATTGCAGAAACAATATTACAGGGCTTTACTGCAGAAGGATTTAGAGGTTGTCAATGCTGGCGGAGAGAGAAAACGTCTCCTAAATATAGCTATGCAACTGCGTAAATGTTGTAATCACCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCTTATACAACTGGAGATCATCTTATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAATTGCTGCCTAAATTAAAAGAGCGAGACTCTAGGGTGCTTATATTTTCACAGATGACCAGGCTTCTAGACATACTTGAAGATTACTTGATATTTCGTGGATATCAGTATTGTCGTATTGATGGTAATACTGGTGGAGATGATCGTGATGCTTCTATTGAAGCTTTCAATAAACCTGGAAGTGAAAAATTTGTCTTCATGTTATCAACTCGAGCTGGTGGTCTTGGCATTAATCTTGCCACTGCAGATGTTGTCATTCTATATGACAGTGATTGGAACCCACAAGTTGACTTGCAGGCCCAGGACCGGGCTCATAGGATTGGCCAAAAGAAAGAAGTCCAAGTTTTCCGTTTCTGCACTGAGTATACCATTGAGGAAAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCGCTTGATGCACTGGTGATTCAGCAAGGGCGATTAGCTGAGCAGAAGACTGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTCAGTTCAAAGGATAGTACAATTACAGATGAGGATATTGACAGAATTATTGCTAAAGGAGAAGAAGCAACAGCTGAACTTGACGCCAAGATGAAGAAGTTCACTGAAGATGCAATCAAGTTCAAGATGGATGGGACTACTGAGTTGTATGATTTTGATGATGATAAGGATGAGAACAAATGTGATTTCAAAAAAATTGTCAGTGAAAATTGGATTGAGCCACCAAGAAGAGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACACTGCGCCAAGGTGGTCCTTCAAAACCCAGAGAGCCCCGTATTCCCAGGATGCCTCAGCTGCATGATTTCCAGTTCTTCAACACACAAAGGTTGACTGAGCTTTATGAAAAGGAAGTGCGCTATCTCATGCAAAACCATCAAAAGAATCAGATAAAAGACTCAATTGATGTTGATGAACCAGAAGAGGTGGGCGATCCTTTGACTGCTGAGGAGGTGGAAGAAAAAGAACGCCTGCTAGAGGAGGGATTTTCATCATGGAGCCGAAGGGATTTCAACACTTTCATCAGAGCATGTGAAAAGTATGGTCGAAATGATGTAAAAAATATTGCCTCTGAGATGGAAGGTAAAACAGAGGAGGAAGTTGAAAGATATGCTAGGGTCTTCAAAGAGAGGTACAAGGAATTAAATGATTATGATCGAATTATTAAAAATATTGAAAGAGGAGAGGCTAGAATATCCCGTAAAGATGAGATTATGAAAGCTATTGGGAAGAAGCTGGACCGCTATAAGAATCCATGGCTAGAGTTGAAGGTACAATATGGCCAAAACAAGGGGAAGTTATATAATGAAGAATGTGACCGATTCATGATATGCATGATTCACAAACTTGGTTATGGGAATTGGGATGAGTTAAAGGCATCATTTCGCACATCACCCTTATTTCGGTTTGATTGGTTTGTTAAGTCCCGCACAACACAGGAACTTGCAAGGAGATGTGAGACCCTCATTCGATTGGTAGAAAAGGAAAACCAAGAATTTGATGAGCGGGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCTAAGAACAACACGACCCCTTCAAAACGTGCACTGGCAAGACAGACAGATACTCCATCATCTCTGAAGAAGCGCAAGCAATTAACTATGGACGACTATGTTAGCACGGAGAAAGTAAATGGACATGTATTCTTTGACTTGGTAGTGGTTTTGGTTTGA 3219 0.4132 MARQSKPQSSSDESTSSEEERRLNDAEDEQELEAVARSNGNDNDDDEADAAAAGGAPDSDGDTAEDDGDVDPQISKREKARLREMQKLKKKKIQEMLDKQNADIDAAMNNKGKGRLKYLLQQTELFAHFAKGDQSTSQKKSKGRGRHASKVTEEEEDEEYLKEEEDGLAGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLNEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRPIKFLGNPDERRHIREELLVAGKFDVCVTSFEMAIKEKSAFRRFSWRYIIIDEAHRIKNENSLLSKTMRLFNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSSETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQLQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLIFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDGTTELYDFDDDKDENKCDFKKIVSENWIEPPRRERKRNYSESEYFKQTLRQGGPSKPREPRIPRMPQLHDFQFFNTQRLTELYEKEVRYLMQNHQKNQIKDSIDVDEPEEVGDPLTAEEVEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDVKNIASEMEGKTEEEVERYARVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKVQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKASFRTSPLFRFDWFVKSRTTQELARRCETLIRLVEKENQEFDERERQARKEKKLAKNNTTPSKRALARQTDTPSSLKKRKQLTMDDYVSTEKVNGHVFFDLVVVLV 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2922 1072 Gene3D ISWI, HAND domain 737 835 IPR036306 GO:0003677|GO:0006338|GO:0031491
Mibi01g2922 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 683 IPR027417 -
Mibi01g2922 1072 MobiDBLite consensus disorder prediction 1010 1024 - -
Mibi01g2922 1072 ProSiteProfiles SANT domain profile. 835 887 IPR017884 -
Mibi01g2922 1072 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 362 IPR014001 -
Mibi01g2922 1072 Coils Coil 90 110 - -
Mibi01g2922 1072 MobiDBLite consensus disorder prediction 13 44 - -
Mibi01g2922 1072 MobiDBLite consensus disorder prediction 1010 1043 - -
Mibi01g2922 1072 FunFam ISWI chromatin-remodeling complex ATPase CHR11 924 1028 - -
Mibi01g2922 1072 Pfam HAND 749 831 IPR015194 GO:0003677|GO:0006338|GO:0031491
Mibi01g2922 1072 FunFam ISWI chromatin-remodeling complex ATPase CHR11 406 698 - -
Mibi01g2922 1072 Coils Coil 986 1024 - -
Mibi01g2922 1072 Pfam Helicase conserved C-terminal domain 488 600 IPR001650 -
Mibi01g2922 1072 Gene3D - 924 1027 - -
Mibi01g2922 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 400 IPR027417 -
Mibi01g2922 1072 MobiDBLite consensus disorder prediction 131 165 - -
Mibi01g2922 1072 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 748 838 IPR036306 GO:0003677|GO:0006338|GO:0031491
Mibi01g2922 1072 Gene3D - 406 698 IPR027417 -
Mibi01g2922 1072 Pfam SNF2-related domain 198 465 IPR000330 GO:0005524|GO:0140658
Mibi01g2922 1072 Gene3D iswi atpase 891 923 - -
Mibi01g2922 1072 MobiDBLite consensus disorder prediction 744 765 - -
Mibi01g2922 1072 FunFam ISWI chromatin-remodeling complex ATPase CHR11 737 835 - -
Mibi01g2922 1072 SMART helicmild6 516 600 IPR001650 -
Mibi01g2922 1072 MobiDBLite consensus disorder prediction 1 87 - -
Mibi01g2922 1072 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 490 641 IPR001650 -
Mibi01g2922 1072 SMART ultradead3 181 373 IPR014001 -
Mibi01g2922 1072 Pfam SLIDE 893 1003 IPR015195 GO:0003677|GO:0005634|GO:0006338
Mibi01g2922 1072 Gene3D - 186 401 IPR038718 -
Mibi01g2922 1072 CDD SF2_C_SNF 486 611 - -
Mibi01g2922 1072 CDD DEXHc_SMARCA1_SMARCA5 182 402 IPR044754 GO:0005524
Mibi01g2922 1072 MobiDBLite consensus disorder prediction 69 87 - -
Mibi01g2922 1072 SUPERFAMILY Homeodomain-like 891 1013 IPR009057 -
Mibi01g2922 1072 SMART sant 938 999 IPR001005 -
Mibi01g2922 1072 SMART sant 836 885 IPR001005 -
Mibi01g2922 1072 Gene3D - 836 890 - -
Mibi01g2922 1072 SUPERFAMILY Homeodomain-like 839 889 IPR009057 -
Mibi01g2922 1072 CDD SANT 839 883 IPR001005 -
Mibi01g2922 1072 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 78 1051 - -
Mibi01g2922 1072 FunFam Chromatin-remodeling complex ATPase 186 401 - -
Mibi01g2922 1072 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 836 890 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2922 Mibi-ChrMibi01 52252268 52260600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2922 206 627 RAD5 or RAD16-like Gene Family AT1G02670 26.337 3.79e-40 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi01g2922 SNF2_N 1.5e-70 CL0023