Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2913 ATGATTCGAAGCCTAATCCAGGACATGAGATGCAGATCTCGGCGTGTGGTACAGGAAGCAATAATAATGAGTGATGATTATGATGATGATGGGTTGAAGCAGAGTTCATGGGCCCACATGCCTCAGGAGCTCCTCAGGGAAGTGTTGCTCAGAATTGAGAACTCCGAGGTATCTTGGCCTCCTCGCAAGAGTGTTGTCGCCTGCGCTGGTGTTTGCCGCAGTTGGAGGGAAATCACCAAAGATATTGTTAAGCCTCCTGAGCTTTCCTCCAAGATCACCTTCCCCATATCCGTCAAGCAGCCTGGCCCTAGAGATAATCTTCTTCAGTGCTTCATAAAGCGCAACCGCTCTTCCCAAACATATTATTTGTTTCTCAGTTTAACTAGTGCTCTAGCTGATGATGGAAAGTTCCTTTTGGCTGCACGCAAGTGCAGGCGTGCAACCTGCACGGATTATATCATCTCTTTAGATGCTGATGATATGTCAAATGGAAGCTACACCTATATCGGGAAGCTGAGATCGAATTTTCTGGGGACGAAGTTCACCATATATGATGGCCAGCCACCTCATGCAGGCGCAAAAATTTCAAAAAGTCGCTCCACTAGGCTGGTGAATCTGAAGCAAGTTTCACCCAGGGTCCCCACTGGTAACTATCCAGTGGCCCACATTTCGTATGAATTAAATGTGTTAGGCTCCAGGGGGCCTAGGAGAATGAATTGTGTCATGGATTCCATTCCTACCTCTGCCATTGAACCGGGAGGGGTAGCGCCAACACAGACTGAATTTTCTGTAAGCAACATTGATGTGTTTCCTTCATTTCCATTTTTCCGATCGAAATCAAATCACATGGAGAAATCCGAGTCTGGACCCCTGTGTGATAAAAAAGATGGGGTGTTAGTTTTGAAAAACAAATCTCCAAGGTGGCATGAACAGCTTCAATGTTGGTGCTTAAACTTTCATGGCCGTGTGACAGTAGCTTCAGTGAAAAACTTTCAGCTGGTGGCTTCCCCAGAAAATGGGGTTGCCGGACCAGAACATGAGAAGATTATCCTCCAGTTTGGCAAAGTAGGGAAGGATTTGTTTACAATGGATTATCGGTACCCCATCTCGGCATTTCAGGCTTTTGCCATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 1170 0.4624 MIRSLIQDMRCRSRRVVQEAIIMSDDYDDDGLKQSSWAHMPQELLREVLLRIENSEVSWPPRKSVVACAGVCRSWREITKDIVKPPELSSKITFPISVKQPGPRDNLLQCFIKRNRSSQTYYLFLSLTSALADDGKFLLAARKCRRATCTDYIISLDADDMSNGSYTYIGKLRSNFLGTKFTIYDGQPPHAGAKISKSRSTRLVNLKQVSPRVPTGNYPVAHISYELNVLGSRGPRRMNCVMDSIPTSAIEPGGVAPTQTEFSVSNIDVFPSFPFFRSKSNHMEKSESGPLCDKKDGVLVLKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGVAGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2913 389 FunFam Tubby-like F-box protein 94 389 - -
Mibi01g2913 389 ProSitePatterns Tub family signature 2. 374 389 IPR018066 -
Mibi01g2913 389 Gene3D - 30 89 - -
Mibi01g2913 389 Gene3D Tubby Protein; Chain A 94 389 IPR025659 -
Mibi01g2913 389 Pfam Tub family 98 384 IPR000007 -
Mibi01g2913 389 SUPERFAMILY F-box domain 31 81 IPR036047 GO:0005515
Mibi01g2913 389 Pfam F-box domain 37 83 IPR001810 GO:0005515
Mibi01g2913 389 PANTHER TUBBY-RELATED 30 387 - -
Mibi01g2913 389 ProSitePatterns Tub family signature 1. 319 332 IPR018066 -
Mibi01g2913 389 PRINTS Tubby superfamily signature 319 335 IPR000007 -
Mibi01g2913 389 PRINTS Tubby superfamily signature 367 389 IPR000007 -
Mibi01g2913 389 PRINTS Tubby superfamily signature 346 365 IPR000007 -
Mibi01g2913 389 PRINTS Tubby superfamily signature 301 318 IPR000007 -
Mibi01g2913 389 PRINTS Tubby superfamily signature 152 168 IPR000007 -
Mibi01g2913 389 PRINTS Tubby superfamily signature 217 244 IPR000007 -
Mibi01g2913 389 PRINTS Tubby superfamily signature 168 192 IPR000007 -
Mibi01g2913 389 SUPERFAMILY Tubby C-terminal domain-like 86 389 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2913 Mibi-ChrMibi01 52137703 52140465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2913 2 389 TUB Transcription Factor Family AT2G47900 69.512 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mibi01g2913 Tub 6.1e-113 CL0395