Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2746 ATGCGATCCCTCAATATCCTTCCACCATTGCCGTCGCTGCAAAACCCCACTTCCGAAAACACTCACTTCTTCAAACCCATAAGCGCCATCAATTTCCACCCTACTTCCAAAACCCTAACCAACGGTTTCTGCTACAGAGTTCAAAGCAGTGGACTTCGCTGTCGGAAGAGCAATAATTGCAATGCTTTTAAGGATTCCGGCGAGGAAACTAAGGTTGTCTGGGAATCCACTGGCGGCGGTGACGGCGGAGGGAGTGGTGGTAATAATGGCGGCGATGGTAGTGAGGATAAGGAGGTGAAGAAGAAAGATGGGTCTTCTTCTTCTTCTTCGGGACCTTTGCCTGATTGGTTGAATTTCACTTCCGATGATGCTAAGACGGTTTTTGCGGCTCTGGCAATATCTCTTGCGTTTCGGTCGTTTGTGGCTGAGCCTAGGTACATTCCTTCCTTGTCAATGTATCCTACGTTTGATGTTGGGGATCGAATTGTTGCAGAGAAGGTTTCATACTATTTTAGAAAGCCTTGCACAAATGACATAGTAATATTTAAAAGCCCACCAATCCTTCAGGAAGTTGGGTACACTGATGATGATGTCTTTATCAAAAGAGTGGTTGCAAAAGGAGGTGATATTGTGGAGGTTCATAAAGGACACCTTATAGTTAATGGGGTTGAAAGGAATGAAAAGTTCATTCTCGAACCACCTTCTTATGACATGAAACCAACACGTGTGCCAGACAATTATGTTTTTGTGATGGGAGACAATCGCAACAACAGCTATGATTCGCATGTGTGGGGACCCCTACCGGCCAAGAACATCATAGGAAGATCAGTTTTTCGGTATTGGCCTCCAAACAGGATTGGCAGCACAGTTTCTGAGAAGAGTTGCCCTGTTGAAACTGACCAGGGCCCTAGTCTAGCTCCACAATAA 927 0.4552 MRSLNILPPLPSLQNPTSENTHFFKPISAINFHPTSKTLTNGFCYRVQSSGLRCRKSNNCNAFKDSGEETKVVWESTGGGDGGGSGGNNGGDGSEDKEVKKKDGSSSSSSGPLPDWLNFTSDDAKTVFAALAISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCTNDIVIFKSPPILQEVGYTDDDVFIKRVVAKGGDIVEVHKGHLIVNGVERNEKFILEPPSYDMKPTRVPDNYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIGSTVSEKSCPVETDQGPSLAPQ 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2746 308 ProSitePatterns Signal peptidases I serine active site. 149 156 IPR019756 GO:0004252|GO:0016020
Mibi01g2746 308 FunFam Peptidase/ serine-type peptidase 149 280 - -
Mibi01g2746 308 MobiDBLite consensus disorder prediction 73 112 - -
Mibi01g2746 308 ProSitePatterns Signal peptidases I lysine active site. 201 213 IPR019757 GO:0008236|GO:0016020
Mibi01g2746 308 SUPERFAMILY LexA/Signal peptidase 138 289 IPR036286 -
Mibi01g2746 308 Pfam Signal peptidase, peptidase S26 124 281 IPR019533 GO:0004252|GO:0006465
Mibi01g2746 308 TIGRFAM sigpep_I_bact: signal peptidase I 125 283 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi01g2746 308 CDD S26_SPase_I 143 275 IPR019533 GO:0004252|GO:0006465
Mibi01g2746 308 Gene3D Umud Fragment, subunit A 137 294 - -
Mibi01g2746 308 PANTHER SIGNAL PEPTIDASE I 111 287 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi01g2746 308 ProSitePatterns Signal peptidases I signature 3. 248 261 IPR019758 GO:0004252|GO:0016020
Mibi01g2746 308 PRINTS Bacterial leader peptidase 1 (S26A) family signature 199 211 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi01g2746 308 PRINTS Bacterial leader peptidase 1 (S26A) family signature 140 156 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi01g2746 308 PRINTS Bacterial leader peptidase 1 (S26A) family signature 243 262 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2746 Mibi-ChrMibi01 48819596 48822293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2746 152 282 MADS-box Gene Family AT1G29960 31.579 2.01e-10 55.8