Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2716 ATGTCTATGGCATCTGTGACTAACTTGGAGACAATACAGACACTTCTGAGGGCCCCAAAGAATGTTAGCAAAGCAACCAAAAACTGGCATTCTGCTTTTGTCAGTATATATTGTTACAGAACCCTCTTGTCTCACTTCAAATCTATCAATAATCCTAAAAAGATATTACCTTCTTCCTCCTTCTCTGTCATTGATGTAGACACAGATCATTCTTTTTCTCTTTCCCAAACCACCCTCACAAATCTCGTTAAGGAGAAAAATGTGGAAACCTTGCAAAATCTTGGTGGGGTCCATGGCGTGGCCTCTGCTCTAAAGACCAACATTGAAGATGGGGTCAAGGCCAGTGATATTGGTGTCGACAGTGATGACAATCTCAGTGACGTCGTAAGACGGCGCAATGCGTTTGGTTCAAACACATACCCAAAGCCACCAACGAAAGGTTTCTTTCAGTTTGTGATTGAAGGGTTCAAGGACGCCACCATTCTCGTTCTCTTAGCATGTGCTGCTCTGTCTATTGGCTTTGGCATAAAAGAGAAAGGAATCAAAGAAGGATGGTATGAAGGTGGAAGCATATTTGTTGCCGTTTTTCTCGTCATTGCTGTGTCTTCCATTAGTAATTTCAGACAGAGCAGACAGTTTGACAAATTGTCACAGGTTAGCAAGAACATTCAGGTGGATGTTGTACGAGGTGGTCGAAGGCGACAGGTTTCTATATATGACATTGTCGTTGGTGATGTTGTGTGGCTGAAGATTGGAGACCAAGTTCCTGCTGATGGCTTGTTCTTGGAAGGCCATTCTCTGCAAGTTGATGAGTCAAGCATGACTGGTGAGAGCGACCACGTTGACATTGATTCCCACAGAAACCCTTTTTTGTTCTCTGGTACTAAAGTGGCTGATGGGTTTGCCAAAATGATTGTTACTTCTGTTGGTACAAACACCACTTGGGGTCAAATGATGGGTTCTATAAGCAGAGATAACAATGAACAAACTCCTTTGCAAGCGCGTCTCAATAGGCTTACTTCTGCTATTGGAAAGGTTGGTTTGGCTGTGGCATTTCTCGTTCTTGTTGTTTTGTTGGTACGCTACTTCACTGGGAACACAAGGGATGAGAATGAAAATAGAAAGTACAATGGAAGCAGAACAAAGTTTAATGACATTATGAATGGAGTTGTGAATATTGTTGCTGCTGCTGTTACTATCGTTGTAGTTGCCATCCCAGAAGGGCTTCCTTTGGCTGTCACTTTGACACTTGCTTATTCCATGAAGAAGATGATGGCTGACATGGCTATGGTGAGGAAGCTCTCTGCCTGTGAGACAATGGGGTCTACTACGACAATCTGTACCGATAAGACCGGGACCCTCACACTTAATCAGATGAAGGTGACCAAGTTTTGGCTTGGACAACAATCTATGGAAGAGATAGCTCATGAATCATCAGTTCATTCGGATGTCATTCAATTGATCAAAGAAGGGGTTGCCCTTAACACTACAGGTAGTGTTTTCAAGTCTGAATCATCATCAACAAATTCTGAATATGAGTTTTCAGGTAGTCCGACAGAAAAGGCCATTCTTTCATGGGCTGTTCTTGATTTGGACATGCACATAGAGGAGTTGACTCAAAGTTCCACCATACTTCATGTGGAGACCTTCAATTCAAAGAAGAAGAGAAGTGGGGTTTTGATTAGAAGGAAATCAGACAATAAAATCCATGCACATTGGAAAGGAGCAGCTGAGATGGTATTGAGTCTATGTTCAAACTACTATGATGCTTCTAGCAATGTACAAGACCTTGACGATGGGAAAAGGTTGGTGATTGAGCAAATCATTCAAGGAATGGCAGCCAGCAGCCTCAGGTGTATTGCTTTTGCACATGCAGAAGTAGCAGAAGAAGATTTAAAAGAAGAAGGGCTTACCCTCTTAGGACTTGTTGGTATTAAGGATCCATGCCGTCCAAGTGTGAGGAAAGCCGTGCAAGATTGCCAAAAGGCTGGAGTAAGTGTCAAAATGATCACAGGAGACAATGTTTTCACAGCCAAAGCCATAGCCATAGACTGTGGCATACTCCAACATAATCAAGACACAACTGAAGCAGTCATTGAAGGAGAGGCATTTCGAAACTTGTCTGATGAGGAAAGACTTGAGAGAGTGGATAAAATTTGTGTGATGGCACGATCCTCTCCCTTCGACAAGCTCTTGATGGTTCAATCCCTCAAACAGAAAGGTCATGTAGTTGCAGTCACAGGAGATGGCACAAATGATGCACCAGCATTAAAGGAAGCTGATATTGGACTTTCTATGGGGATTCAAGGCACTGAGGTTGCAAAAGAAAGCTCAGATATAGTCATCTTGGATGATAATTTCGCCTCAGTTGCCACAGTTCTCAAGTGGGGAAGATGTGTCTACAACAACATCCAAAAGTTCATTCAGTTTCAACTAACCGTAAATGTTGCAGCACTTGCAATTAACTTTGTAGCTGCAATATCAGCAGGAAAAGTGCCATTAACAGCAGTTCAACTATTATGGGTGAACCTAATAATGGACACTTTGGGTGCTCTAGCTCTGGCAACAGAGAAGCCTACAATGGAGTTATTGGACAAACCACCAGTGGGTAGAATTGAGCCTCTCATCACCAACATAATGTGGAGAAATCTGTTAGCCCAAGCTTTATACCAAATCACTATACTATTGACATTACAGTTCAAGGGTGAGGCTATATTTGGGGTGAGTTCAAAGGTAAATGACACTTTGATTTTCAACACCTTTGTGTTGTGCCAAGTGTTCAATGAGTTCAATGCAAGGAAGCTGGAGAAGAAGAATGTGTTCCAAGGGATTCACAAGAACAAATTGTTTATGGGGATCATAGGAATGACCATTGTTCTTCAAGTGTTAATGGTGGAGTTTCTGAAGAAATTTGCAGCTACAGAGAGGTTGAATTGGGGGCAGTGGGGTGCATGCATTTTAATGGCAGCTATTTCATGGCCTATTGGTTGGGTTGTGAAGTTCATCCCTGTGTCACAGAGACCATTGCTCAGTTTCCTGAACATGAAGAAGAAATGA 3057 0.4243 MSMASVTNLETIQTLLRAPKNVSKATKNWHSAFVSIYCYRTLLSHFKSINNPKKILPSSSFSVIDVDTDHSFSLSQTTLTNLVKEKNVETLQNLGGVHGVASALKTNIEDGVKASDIGVDSDDNLSDVVRRRNAFGSNTYPKPPTKGFFQFVIEGFKDATILVLLACAALSIGFGIKEKGIKEGWYEGGSIFVAVFLVIAVSSISNFRQSRQFDKLSQVSKNIQVDVVRGGRRRQVSIYDIVVGDVVWLKIGDQVPADGLFLEGHSLQVDESSMTGESDHVDIDSHRNPFLFSGTKVADGFAKMIVTSVGTNTTWGQMMGSISRDNNEQTPLQARLNRLTSAIGKVGLAVAFLVLVVLLVRYFTGNTRDENENRKYNGSRTKFNDIMNGVVNIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADMAMVRKLSACETMGSTTTICTDKTGTLTLNQMKVTKFWLGQQSMEEIAHESSVHSDVIQLIKEGVALNTTGSVFKSESSSTNSEYEFSGSPTEKAILSWAVLDLDMHIEELTQSSTILHVETFNSKKKRSGVLIRRKSDNKIHAHWKGAAEMVLSLCSNYYDASSNVQDLDDGKRLVIEQIIQGMAASSLRCIAFAHAEVAEEDLKEEGLTLLGLVGIKDPCRPSVRKAVQDCQKAGVSVKMITGDNVFTAKAIAIDCGILQHNQDTTEAVIEGEAFRNLSDEERLERVDKICVMARSSPFDKLLMVQSLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVATVLKWGRCVYNNIQKFIQFQLTVNVAALAINFVAAISAGKVPLTAVQLLWVNLIMDTLGALALATEKPTMELLDKPPVGRIEPLITNIMWRNLLAQALYQITILLTLQFKGEAIFGVSSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFQGIHKNKLFMGIIGMTIVLQVLMVEFLKKFAATERLNWGQWGACILMAAISWPIGWVVKFIPVSQRPLLSFLNMKKK 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2716 1018 SMART Cation_ATPase_N_a_2 93 176 IPR004014 -
Mibi01g2716 1018 SFLD p-type atpase 429 800 IPR044492 -
Mibi01g2716 1018 SUPERFAMILY Calcium ATPase, transduction domain A 224 321 IPR008250 -
Mibi01g2716 1018 Pfam Cation transporter/ATPase, N-terminus 95 171 IPR004014 -
Mibi01g2716 1018 Gene3D - 457 648 IPR023299 GO:0000166
Mibi01g2716 1018 SFLD Haloacid Dehalogenase 429 800 - -
Mibi01g2716 1018 FunFam Calcium-transporting ATPase 195 323 - -
Mibi01g2716 1018 PANTHER CATION TRANSPORTING ATPASE 65 1004 - -
Mibi01g2716 1018 SUPERFAMILY Calcium ATPase, transmembrane domain M 95 1005 IPR023298 -
Mibi01g2716 1018 FunFam Calcium-transporting ATPase 764 1006 - -
Mibi01g2716 1018 PRINTS H+-transporting ATPase (proton pump) signature 605 623 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi01g2716 1018 PRINTS H+-transporting ATPase (proton pump) signature 747 763 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi01g2716 1018 PRINTS H+-transporting ATPase (proton pump) signature 779 804 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi01g2716 1018 SUPERFAMILY HAD-like 445 852 IPR036412 -
Mibi01g2716 1018 Gene3D - 127 323 - -
Mibi01g2716 1018 Pfam E1-E2 ATPase 224 425 - -
Mibi01g2716 1018 Pfam Cation transporting ATPase, C-terminus 832 1002 IPR006068 -
Mibi01g2716 1018 FunFam Calcium-transporting ATPase 642 792 - -
Mibi01g2716 1018 FunFam Calcium-transporting ATPase 457 648 - -
Mibi01g2716 1018 Gene3D - 444 792 IPR023214 -
Mibi01g2716 1018 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 70 1004 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Mibi01g2716 1018 Pfam haloacid dehalogenase-like hydrolase 444 761 - -
Mibi01g2716 1018 PRINTS P-type cation-transporting ATPase superfamily signature 447 461 - -
Mibi01g2716 1018 PRINTS P-type cation-transporting ATPase superfamily signature 771 783 - -
Mibi01g2716 1018 PRINTS P-type cation-transporting ATPase superfamily signature 641 652 - -
Mibi01g2716 1018 PRINTS P-type cation-transporting ATPase superfamily signature 270 284 - -
Mibi01g2716 1018 PRINTS P-type cation-transporting ATPase superfamily signature 663 673 - -
Mibi01g2716 1018 PRINTS P-type cation-transporting ATPase superfamily signature 747 766 - -
Mibi01g2716 1018 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 453 653 IPR023299 GO:0000166
Mibi01g2716 1018 Gene3D - 154 1002 - -
Mibi01g2716 1018 ProSitePatterns E1-E2 ATPases phosphorylation site. 449 455 IPR018303 -
Mibi01g2716 1018 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 720 828 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi01g2716 1018 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 191 363 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi01g2716 1018 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 388 484 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2716 Mibi-ChrMibi01 48286040 48289096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2716 12 1018 Primary Pumps ATPases AT3G22910 67.421 0.0 1311