Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2646 ATGCTGTTTATAAGTCACCCTCACCTTGCCGGACTTTCTGTAAGCATCCAAAATATTTTTCACCAAAGCAATCCAAAGGCCATGATGCTCGGAGAATACCATCATGATCATCCAACAGTCCTCGTTCCTCCTTGGCCCCTCCACCTTGATGATTTGACCTCTGATATTTCCTCTCCAATTCCGGCCACTGGTTTCTCCGGCGACTCCGACATCAATTCCGGCGCCGGCGATTACTCGCCGTATTACTTACAAGAGTCTCTCTCAGCTTTCCAGCGTTACCTTCCCTCCAACGATGCCGATGCTGACTCCGACACCGATGCTTGCGATGCCGATGCCGATGCCCCGGTCGACGCATACTCCTGCGATCATTTCCGTATGTACGAGTTCAAGGTGAGGAAGTGCGCACGTGGCAGGTCACATGACTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGTAGGGATCCAAGGAAGATTCTCTATTCTGGAAGTGCTTGCCCTGATTTCCGCAAAGGTAGCTGTAAGAGAGGTGATTCCTGTGAGTTCGCTCATGGAGTTTTTGAGTGTTGGCTTCACCCTTCTCGTTATCGTACCCAGCCTTGTAAGGACGGTACGGGTTGCAGAAGAAGGGTTTGTTTTTTCGCTCACACGCCTGAGCAGCTCAGGATTCTGCCTCCACAGAGTCCAAGGAGTGTTAACTCTGTAGATTTATACGATGGATCTCCCATGAGGCAGATGATTGAGTCATCTTGTGTGAAATCTCTGCCGTTCATGTCATCTCCGGCTTCGATTTCGCCGCCGGCGAGTTCTCCGGCGGATTCTCCTCCTGTGTCTCCGATGGCACAGTCCCTGAACGAGATGGTGGCTTCCCTGCGTAATATCCAGCTGGGTAAGGCGAAATCTTTGTCGTTATCCTCTTCTTGGAATGTTCCAATGGGATCTCCTAGTTTCGGGTCTCCGAGAGGGTCCATGCTCCGACCCGGATTCTGCAGCCTCCCGAATACCCCGACGCAGGCGCCGACCCGAGGCGGAGGCGGAGCGGGCGGATGTTTCGATGTTTGGGAACAGAGTTGTTGTGAGGAGGAGCCGGTGATGGAGAGGGTGGAGTCTGGGAGGAACATAAGGGCGAGGATGTTTGAGAAATTGAGCAAAGAGAATTCTCTAAACGGGTCGGATCCGGGTTCATCGGGTGGGGGTCCGGATGTAGGGTGGATATCGGAGCTGATGAAGTGA 1242 0.5338 MLFISHPHLAGLSVSIQNIFHQSNPKAMMLGEYHHDHPTVLVPPWPLHLDDLTSDISSPIPATGFSGDSDINSGAGDYSPYYLQESLSAFQRYLPSNDADADSDTDACDADADAPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKILYSGSACPDFRKGSCKRGDSCEFAHGVFECWLHPSRYRTQPCKDGTGCRRRVCFFAHTPEQLRILPPQSPRSVNSVDLYDGSPMRQMIESSCVKSLPFMSSPASISPPASSPADSPPVSPMAQSLNEMVASLRNIQLGKAKSLSLSSSWNVPMGSPSFGSPRGSMLRPGFCSLPNTPTQAPTRGGGGAGGCFDVWEQSCCEEEPVMERVESGRNIRARMFEKLSKENSLNGSDPGSSGGGPDVGWISELMK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2646 413 SMART c3hfinal6 163 189 IPR000571 GO:0046872
Mibi01g2646 413 SMART c3hfinal6 198 221 IPR000571 GO:0046872
Mibi01g2646 413 Gene3D - 164 226 - -
Mibi01g2646 413 SUPERFAMILY CCCH zinc finger 163 192 IPR036855 GO:0046872
Mibi01g2646 413 ProSiteProfiles Zinc finger C3H1-type profile. 163 190 IPR000571 GO:0046872
Mibi01g2646 413 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 167 188 IPR000571 GO:0046872
Mibi01g2646 413 MobiDBLite consensus disorder prediction 387 413 - -
Mibi01g2646 413 FunFam Zinc finger CCCH domain-containing protein 66 121 189 - -
Mibi01g2646 413 PANTHER UNKEMPT FAMILY MEMBER 85 413 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2646 Mibi-ChrMibi01 46100789 46102030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2646 119 282 C2H2 Transcription Factor Family AT5G12850 55.488 7.72e-56 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi01g2646 zf-CCCH 1.9e-07 CL0537