Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2556 ATGGGGTTAGTTCAAGTAAACAACGTTGAGGACTTTGTGAATATCCCAAAACGACCAGCAGAATTAAATCAACATATGCAAGATGAGCAAAATAAGGTTAGGGGTGGGATTACAGGAGAGGGGCAAGATCTATCCATGGAGGATGAGTCAAGGATCAATGACAATATTGGAGATGAAAATTATCAAAATCACATAAATGAAGGAGATCTTACAAAAAAGAGCAACACTAAACAACAAATCCAAGGGCCTTTGGTTCGTTGGGAGAGGTTCTTGCCTGTTAGATCATTGAAGGTGTTATTGGTTGAGAATGATGATTCAACACGCCATGTGGTTTGTGCTTTACTTCGGAATTGTGGATATGAAGTTGAAGCTGTTGCAGATGGTCATCAAGCATGGACAATTCTTGAAGATCTTACTGCTAACATTGATCTTGTTTTAACTGAGGTATCATTGCCAAGTTTAACAGGCATTGGTCTCCTATCCAAGATTATGAGCCATAAAACGCGTAAAAACATTCCTGTGATTATGATGTCATCTCATGATTCTATGAATATAGTATTTAAGTGTTTATCCAGGGGTGCAATTGACTTTTTAGTCAAGCCATTACGAAAGAATGAGCTTAAAAACCTTTGGCAGCATGTTTGGAGGAAATGTCATAGCTCTAGTGGTAGTGGAAGTGAAAGTGGTGTGCGTACTCAAAAGTCATTGAAGTCCGAAAGTGGAGAACATTCAGACAACAAGCATGACAATTTTGATGAAGATGATATTGGAAGCATTGGATTTAATGCAAGAGATAAAAGTGATAATGGAAGTGGCACCCAGAGTTCTTGGACAAAGATTGCAGTTGAAGTTGATAGCCCACGACCTATGTCCCTATGGGAAAAATTACGTGATCCACCTGTAGGTAGCACTTGTGCCCAAGTTATTCACTCAAATCCTAAAATAGCTACAAACACTAAAGTGGTTGCAACAAAAGATCTTGAGACACAAGACGCATTGGAAATGATGACGGGCATAGACTTGGAGATAACAGCATCTAGATCAATGCCAACATTGGAACCTTGTGGACCACGGGAACATGCTCCATCAAATTTTGTTGCTTGTAACATTATTAAAAGCCTTGAGAAGGAAAAAGTTGATGAAAAGAAAGAAAATGGGCAAGTAGAGAAAAATAGCACTGAAAAAGTAGTTGGAGAATTAAAAAATAATCAAGGTACTGGTCCAACAAGTGTTTTCACTAACTATAATTCTAATTCTGATCCAATCTTAGATATTCAATGCTTAGAGAACCCAAATGGAATGGTCTCAAATGTTGAAGATAAGAATATATATGGAAACAAGGAATTGCAGTCATTTGAGTTCAGTTCAAAGAGTTTGAATGGGACACCAGATGTTGGAAGTAGTATACAAGATCAAAATGTGTTAAAGCAATCACAACGTTCTGCTTTCTCCAGGTATAACTCATCATCTCATCAAGGTCCAACAGGAAATATTGGTAGTTGCTCACCTATTGATAATAGCTCAGAGGCAGCAAAAACAGAATCGGTGCAAGGCATGAGAACTTATTTTAATAGCATGCCTCCCAATCTACAATCCAATGGAAGTAATAACAACAATGAACATGGATCCAGTACAAATAATGACTTCACCAAACCATCTGTGGCCATTGATAAGCTATCAGAGAAAGAAGCCATCAAATATATACAACCCACTTCAATATCCCAACCTGTTGAAAATTTGTCTCTTCAACCATTGGCTCAAGAAAATGGTGATAAGCAACAGATACAAGTGCAACACCACCACCATCACCACCACCATCACCACCATCATCACATGCATAATATGGTTGCTCATCAATTAGCCAACAAAAATGGCCAGTCTCTACAAATGAAGACACCTACGTCTCTTAATGAATCTTCAACAAATCCTTTGAGTGCGCCAATTGAAAGCAAAGCTTGTAAGTTGAGTCTAAATGGGAGTGCTTCTGAGAGTCACCATGGGAGCAATGTTGATCCAGGGAACAATGCCCCTTTACCTGGAAAAGTAGGAAACATGGAACCTGATATTAGAATATCTGAAAAAGAGGGAACAACAAGTTTAATGAGACTTGAAGCTCCAAATTTAACTATACAAAATCAATTTGCACGAAGGGAAGTTGCTTTGAATAAGTTTCGCCAAAAGAGGAAAGAGAGATGCTTTGAGAAAAAGGTTCGCTATCAAAGCAGGAAGAAACTAGCAGAACAAAGGCCCCGAGTCCGTGGACAATTTGTACGGCATGCAATTGATGAAAATAAAATAAAGGAAAACAATGTTCAATACATGTCCCAATGA 2331 0.3835 MGLVQVNNVEDFVNIPKRPAELNQHMQDEQNKVRGGITGEGQDLSMEDESRINDNIGDENYQNHINEGDLTKKSNTKQQIQGPLVRWERFLPVRSLKVLLVENDDSTRHVVCALLRNCGYEVEAVADGHQAWTILEDLTANIDLVLTEVSLPSLTGIGLLSKIMSHKTRKNIPVIMMSSHDSMNIVFKCLSRGAIDFLVKPLRKNELKNLWQHVWRKCHSSSGSGSESGVRTQKSLKSESGEHSDNKHDNFDEDDIGSIGFNARDKSDNGSGTQSSWTKIAVEVDSPRPMSLWEKLRDPPVGSTCAQVIHSNPKIATNTKVVATKDLETQDALEMMTGIDLEITASRSMPTLEPCGPREHAPSNFVACNIIKSLEKEKVDEKKENGQVEKNSTEKVVGELKNNQGTGPTSVFTNYNSNSDPILDIQCLENPNGMVSNVEDKNIYGNKELQSFEFSSKSLNGTPDVGSSIQDQNVLKQSQRSAFSRYNSSSHQGPTGNIGSCSPIDNSSEAAKTESVQGMRTYFNSMPPNLQSNGSNNNNEHGSSTNNDFTKPSVAIDKLSEKEAIKYIQPTSISQPVENLSLQPLAQENGDKQQIQVQHHHHHHHHHHHHHMHNMVAHQLANKNGQSLQMKTPTSLNESSTNPLSAPIESKACKLSLNGSASESHHGSNVDPGNNAPLPGKVGNMEPDIRISEKEGTTSLMRLEAPNLTIQNQFARREVALNKFRQKRKERCFEKKVRYQSRKKLAEQRPRVRGQFVRHAIDENKIKENNVQYMSQ 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2556 776 Pfam CCT motif 717 758 IPR010402 GO:0005515
Mibi01g2556 776 MobiDBLite consensus disorder prediction 627 646 - -
Mibi01g2556 776 FunFam Two-component response regulator-like PRR37 96 254 - -
Mibi01g2556 776 SMART REC_2 96 211 IPR001789 GO:0000160
Mibi01g2556 776 ProSiteProfiles Response regulatory domain profile. 97 215 IPR001789 GO:0000160
Mibi01g2556 776 MobiDBLite consensus disorder prediction 657 671 - -
Mibi01g2556 776 MobiDBLite consensus disorder prediction 219 235 - -
Mibi01g2556 776 SUPERFAMILY CheY-like 94 219 IPR011006 -
Mibi01g2556 776 Pfam Response regulator receiver domain 98 209 IPR001789 GO:0000160
Mibi01g2556 776 PANTHER TWO-COMPONENT RESPONSE REGULATOR 96 314 IPR045279 GO:0009736
Mibi01g2556 776 MobiDBLite consensus disorder prediction 463 552 - -
Mibi01g2556 776 MobiDBLite consensus disorder prediction 219 277 - -
Mibi01g2556 776 CDD psREC_PRR 98 201 - -
Mibi01g2556 776 MobiDBLite consensus disorder prediction 657 680 - -
Mibi01g2556 776 Coils Coil 371 391 - -
Mibi01g2556 776 MobiDBLite consensus disorder prediction 591 614 - -
Mibi01g2556 776 Gene3D - 95 249 - -
Mibi01g2556 776 ProSiteProfiles CCT domain profile. 717 759 IPR010402 GO:0005515
Mibi01g2556 776 MobiDBLite consensus disorder prediction 236 261 - -
Mibi01g2556 776 MobiDBLite consensus disorder prediction 597 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2556 Mibi-ChrMibi01 43258400 43275062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2556 84 289 Response Regulator Gene Family AT5G60100 69.048 3.45e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Mibi01g2556 Response_reg 1.6e-21 CL0304