Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2507 ATGGAACAAGTACACTGTATCCCAAAAAAAAAAAATGGAACAAGTACATTAAATTTTAGAGAGAGAATTAACTCCGAGTTGACCCTGTTTGATCCATGGGCTATTGAGTCTCAAATCAAAACAGAGGAAAATATGACTTCTCTGCTTCCATATGGCGACGTTGATTTCAGCTTGAGGGCAATGGCGGGTCGCGCTGAGGGATTTGGCCGCAACGCCATTGGTGGCCTTAACGGCCCTCTCTATTTCGTCACCACCCTCGCTGATGATGGTCCTGGATCCCTTCGGGATGGATGTCGGAGAAAGGAGCCACTCTGGATTGTTTTTGAAGTCTCTGGTATAATTCATCTTTCTTCATACTTGAGTGTATCATCTTATAAGACAATAGATGGCCGAGGCCAAAGCATAAAGCTCACAGGAAAGGGTCTAAGGCTGAAAGAATGTGAGCATATAATTGTATGCAACCTTCAGTTTGAAGGTGGTAGGGGCCATGATGTTGACGGCATTCAAATAAAACCAAACTCTAGGCACATATGGATAGATCGCTGCAGTCTTCGTGATTATGATGACGGGCTTATAGACATTACAAGGCAAAGCACTGATATTACTATATCTAGATGTTACTTTGCACAGCATGATAAGACAATGCTAATTGGAGCTGACCCAACTCACGTTGGCGATAGATGCATACGGGTGACAATTCATCACTGCTTCTTTGATGGGACACGGCAAAGACAACCTCGGGTTAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGTATATATGCTGTTTGTGCTAGTGTTGAGTCCCAGATATTCTCTCAGTGCAACATTTATGAAGCAGGAACTAAGAAAAAGACATTTGAATTCTATACAGAGAAGGCTGCTGATAAGGAGGAGCAGAAATCTGGCACCATAATATCTGAAGGAGACATATTTCTGAATGGTGCACAACCATGCTTATTACAAACACAACACACAGAAGGATGCATGTTCCACCCTTCTGAATATTATCCTACTTGGACTATGGAAGCACCCTCACATTCTTTTAAAGATGTTCTGCAAATATGTTCAGGCTGGCAATCTATTTGTCGGCCTGCCGAATCCTCTCCTTCTTAG 1131 0.4253 MEQVHCIPKKKNGTSTLNFRERINSELTLFDPWAIESQIKTEENMTSLLPYGDVDFSLRAMAGRAEGFGRNAIGGLNGPLYFVTTLADDGPGSLRDGCRRKEPLWIVFEVSGIIHLSSYLSVSSYKTIDGRGQSIKLTGKGLRLKECEHIIVCNLQFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAVCASVESQIFSQCNIYEAGTKKKTFEFYTEKAADKEEQKSGTIISEGDIFLNGAQPCLLQTQHTEGCMFHPSEYYPTWTMEAPSHSFKDVLQICSGWQSICRPAESSPS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2507 376 Pfam Pectate lyase 120 282 IPR002022 -
Mibi01g2507 376 SUPERFAMILY Pectin lyase-like 62 324 IPR011050 -
Mibi01g2507 376 PRINTS Pollen allergen Amb family signature 64 81 IPR018082 -
Mibi01g2507 376 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
Mibi01g2507 376 PRINTS Pollen allergen Amb family signature 244 263 IPR018082 -
Mibi01g2507 376 PANTHER PECTATE LYASE 18-RELATED 59 327 IPR045032 GO:0030570
Mibi01g2507 376 Gene3D - 53 359 IPR012334 -
Mibi01g2507 376 SMART amb_all 111 289 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2507 Mibi-ChrMibi01 41671397 41675235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2507 86 372 Polysaccharide Lyase AT3G55140 81.533 0.0 510