Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2465 ATGTCATTGGGTTATTCTGGAACAGAAGGTAATAATAGCCTCTCAAATTCTAGCTCTATTATTATTGCATTTGAATCCATGGCAAGTAGTCCTGCTACTAGTGTTTCAATTATGGCTCCTGCTTCTGGTTTTGCTTCAGAGCATCATTTGCTTCAGAAACTTGGACGAGACATGGGACGAATGGTTCTCTCCAACAAGAAGCTTAAACAGAAGCTTAGAGCTGAGTTAGCTCAATCTGAGCCCCCAAATCCAGATTCTTCTTTCAAAAGCCTTCTTGACTCTTCCACTCCCAAAATCCGATTATCGAAGAGAGAGAAGCGCCGTGAGGCTCGCTCTTTACAACAACCCGAGATTACCCAAGAAACTGATGATGGTAAAGAAGAAGAGGAAACAAAGAAAAAAAGTAAAAAGAGGAAGAGGAAGGCTGAGGAGAACGGTGTGCCAAATGGGGATGTGAAAGATGCGAAGAAATCGAAGAAGAAAAGTGATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATTAAGAACAAGAAAAAGGCCAAAACAGACAAAGAAAAGGATGCTAATCCTGGAGATGAGAAGATAGATGCTTCAGAGTTACCTAATAGTAATGGCAGTGAACAAAAAGTTGATGTTCCTACAAAAGTGTACGTTGGAGGAATTCCCTACTATTCAACCGAGGATGATATTCGAAGCTATTTCGAAGGCTGTGGCACAATTACTGAAATTGACTGCATGACGTTTCCTGAGACTGGCAAGTTTAGAGGGATTGCACTTATCAGCTTTAAGACTGAAGCTGCTGCTAAACGAGCATTGGCTCTTGATGGATCTGACATGGGTGGACTATTTCTTAAAATCCAACCGTATAAAACAACCCGATCCATTAAAGCGCCTGATTTTGCCCCAAAACCTGTGGAAGGGTACAACAGAATCTATGTTGGAAATTTGTCATGGGACATAACAGAGGATCAATTAAGGAGTCTATTCTCAAACTGCAGCATATCCTCCATACGTTTTGGTATGGATAAGGAGACAGGAGAATTCCGTGGGTATGCCCATGTGGATTTCACCGACAGTCAATCAGTGAAAACAGCGCTTGCCATGGACCAAAAGGTAATGCATGGGAGACCTGTTAGGATAACTTGTGCGGTTCCTTTGAAGAAGCCATTGAAACAAACAACCGATGTGGCATCACCAGCGTCTACGAACACCGAAGTTGATAGTGAGAAGACAACCACCACTGGAAGTGGCAAAATGAAGAGGAGGACATGCTTTGAGTGTGGTGAAAAGGGACATATTTCTTCTGCATGCCCAAAGAAACAGAATGTTGATTCAAATACAAGCTAG 1347 0.4202 MSLGYSGTEGNNSLSNSSSIIIAFESMASSPATSVSIMAPASGFASEHHLLQKLGRDMGRMVLSNKKLKQKLRAELAQSEPPNPDSSFKSLLDSSTPKIRLSKREKRREARSLQQPEITQETDDGKEEEETKKKSKKRKRKAEENGVPNGDVKDAKKSKKKSDKKKKKKKKKKIKNKKKAKTDKEKDANPGDEKIDASELPNSNGSEQKVDVPTKVYVGGIPYYSTEDDIRSYFEGCGTITEIDCMTFPETGKFRGIALISFKTEAAAKRALALDGSDMGGLFLKIQPYKTTRSIKAPDFAPKPVEGYNRIYVGNLSWDITEDQLRSLFSNCSISSIRFGMDKETGEFRGYAHVDFTDSQSVKTALAMDQKVMHGRPVRITCAVPLKKPLKQTTDVASPASTNTEVDSEKTTTTGSGKMKRRTCFECGEKGHISSACPKKQNVDSNTS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2465 448 SMART c2hcfinal6 423 439 IPR001878 GO:0003676|GO:0008270
Mibi01g2465 448 MobiDBLite consensus disorder prediction 392 417 - -
Mibi01g2465 448 MobiDBLite consensus disorder prediction 180 194 - -
Mibi01g2465 448 MobiDBLite consensus disorder prediction 141 158 - -
Mibi01g2465 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 378 IPR000504 GO:0003723
Mibi01g2465 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 282 IPR000504 GO:0003723
Mibi01g2465 448 Gene3D - 301 391 IPR012677 -
Mibi01g2465 448 MobiDBLite consensus disorder prediction 98 114 - -
Mibi01g2465 448 Coils Coil 125 145 - -
Mibi01g2465 448 SUPERFAMILY Retrovirus zinc finger-like domains 411 443 IPR036875 GO:0003676|GO:0008270
Mibi01g2465 448 SUPERFAMILY RNA-binding domain, RBD 302 388 IPR035979 GO:0003676
Mibi01g2465 448 SMART rrm1_1 310 381 IPR000504 GO:0003723
Mibi01g2465 448 SMART rrm1_1 215 287 IPR000504 GO:0003723
Mibi01g2465 448 Pfam Zinc knuckle 422 439 IPR001878 GO:0003676|GO:0008270
Mibi01g2465 448 MobiDBLite consensus disorder prediction 73 209 - -
Mibi01g2465 448 Gene3D - 149 287 IPR012677 -
Mibi01g2465 448 Coils Coil 164 187 - -
Mibi01g2465 448 MobiDBLite consensus disorder prediction 159 179 - -
Mibi01g2465 448 MobiDBLite consensus disorder prediction 394 417 - -
Mibi01g2465 448 ProSiteProfiles Zinc finger CCHC-type profile. 424 439 IPR001878 GO:0003676|GO:0008270
Mibi01g2465 448 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 127 288 - -
Mibi01g2465 448 CDD RRM1_PHIP1 216 287 IPR034361 -
Mibi01g2465 448 CDD RRM2_PHIP1 310 380 IPR034362 -
Mibi01g2465 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 291 IPR000504 GO:0003723
Mibi01g2465 448 Gene3D - 402 448 - -
Mibi01g2465 448 SUPERFAMILY RNA-binding domain, RBD 208 292 IPR035979 GO:0003676
Mibi01g2465 448 MobiDBLite consensus disorder prediction 80 97 - -
Mibi01g2465 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 385 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2465 Mibi-ChrMibi01 40553340 40557642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2465 214 383 Eukaryotic Initiation Factors Gene Family AT3G16380 27.072 7.13e-08 52.8