Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2269 ATGGAAGGAGAAGGTGGTTCAAATGGGAGTTCATGTGTGGTGGGTTATGGAGAGAACAGTAACAATAGTGGTGGAGGTGGAGGTGGTGGGTTATGTGCTTCTTCGTCTCATCCAATGATGATGATGATGCCTTTTGTGACTACTACTTGTCATAATGTTTCCCATCAATTCCCATTCACTAGTCCTAATCCTATGAATACTAATGCTCCCTCACACAACATTACTTCTAGTACTACTACTCCTTTCCTTCTTCCTTTCCCTCCTTCTTGCACTAATACTACTTCTCCCTCTCCTTCTAATCATCAACCCCAAAACCCCAACAACATCACCACTTCTGGGCTAGTCTCCTTTTTCATGGACTCCAACAACGCTGGCTCTTCTTCTTCCTCATCTGCTGCAAAAGCAAAGATCATGGCTCATCCTCACTATCAACGTCTCTTGTCTGCCTACGTTAATTGTCAAAAGGTTGGAGCGCCGCCGGAAGCGGTGGCGAGGTTGGAGGAAGCATGTGCGTCGGCGTTGACAATGGCCGGCGGCGGCGGAGGAGGGTCAGGGTGTATCGGAGAAGATCCAGCACTGGATCAGTTTATGGAGGCTTATTGTGAGATGCTTACGAAGTATGAGCAAGAACTCTCCAAACCCTTTAGGGAAGCTATGCACTTCCTTCACACCATTGAGTCTCAGTTCAAATCTCTCACTATTTCTTCCTCTTCTTCGGACTTTGCTTGTGGTGAGGCTAGTGATCGGAATGGATCGTCAGAAGAAGACATGGAAGTGCCGAAGAACCTGATCGATCCGCTGGCGGATGACCAAGAATTAAAGGGCCAACTTCTTCGGAAATACAGCGGATACCTGGGCAGCCTGAAGCAGGAATTCATGAAAAAGAGGAAGAAAGGGAAGCTCCCCAAAGAAGCAAGGCAACAGCTTCTTGATTGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAGTCGCAGAAGCTGGCTCTGGCAGAAACAACGGGACTGGATCAGAAGCAAATAAACAACTGGTTCATTAATCAAAGGAAGCGTCATTGGAAACCATCAGAGGATATGCAATTCATGGTGGTGGATCCTTCTCATCCTCATCACCACTATTACATGGACACTGTTCTTGGCAATCCCTATCCCATGATCTAA 1161 0.4711 MEGEGGSNGSSCVVGYGENSNNSGGGGGGGLCASSSHPMMMMMPFVTTTCHNVSHQFPFTSPNPMNTNAPSHNITSSTTTPFLLPFPPSCTNTTSPSPSNHQPQNPNNITTSGLVSFFMDSNNAGSSSSSSAAKAKIMAHPHYQRLLSAYVNCQKVGAPPEAVARLEEACASALTMAGGGGGGSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFREAMHFLHTIESQFKSLTISSSSSDFACGEASDRNGSSEEDMEVPKNLIDPLADDQELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAETTGLDQKQINNWFINQRKRHWKPSEDMQFMVVDPSHPHHHYYMDTVLGNPYPMI 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2269 386 ProSitePatterns 'Homeobox' domain signature. 330 353 IPR017970 GO:0000981|GO:0006355
Mibi01g2269 386 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 98 361 - -
Mibi01g2269 386 SUPERFAMILY Homeodomain-like 294 371 IPR009057 -
Mibi01g2269 386 SMART HOX_1 294 359 IPR001356 GO:0003677
Mibi01g2269 386 Pfam Homeobox KN domain 312 351 IPR008422 GO:0003677|GO:0006355
Mibi01g2269 386 SMART KNOX1_2 131 175 IPR005540 GO:0003677|GO:0005634
Mibi01g2269 386 Pfam KNOX1 domain 134 171 IPR005540 GO:0003677|GO:0005634
Mibi01g2269 386 SMART ELK_2 272 293 IPR005539 GO:0003677
Mibi01g2269 386 ProSiteProfiles 'Homeobox' domain profile. 292 355 IPR001356 GO:0003677
Mibi01g2269 386 MobiDBLite consensus disorder prediction 85 113 - -
Mibi01g2269 386 CDD homeodomain 304 356 IPR001356 GO:0003677
Mibi01g2269 386 Pfam ELK domain 272 293 IPR005539 GO:0003677
Mibi01g2269 386 FunFam Homeobox protein knotted-1-like 2 297 359 - -
Mibi01g2269 386 SMART KNOX2_2 183 234 IPR005541 GO:0003677|GO:0005634
Mibi01g2269 386 Pfam KNOX2 domain 186 233 IPR005541 GO:0003677|GO:0005634
Mibi01g2269 386 Gene3D - 297 359 - -
Mibi01g2269 386 ProSiteProfiles ELK domain profile. 272 292 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2269 Mibi-ChrMibi01 34294860 34299644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2269 133 385 Homeobox Transcription Factor Family AT1G62360 77.344 7.93e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mibi01g2269 KNOX2 2.1e-22 No_clan