Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2260 ATGACCATAAAACCAAACACCAAACTCCTAATTTATCTCTCATTTCTCATCCAAATCCAAATCCTCAGAGTCAAACCTAACTGCATCTCCGGTTGCAACCTCGCTCTAGCATCATACTACGTCGGGGAAGGAACAAACCTAACATACATAAGCAAAATCTTCAATCAACAAATCTCACAAATCCTCAAATACAATCCAAAAATCCCCAATCCAGACTACATCCAAACCAATATCCGAATCAACATACCATTCAGATGCGATTGCCTAAACGGAATCTTCCTAGGGCACACATTCACATACAAAACACAACCAGGCGATACATACCACAAAATTGCAGGTGAAGCGTTTTCTAACTTGACGAATGAGGAATGGTTGGAGAGGGTTAATAGGTACGAAGCGATACATATTCCTGCGGGCGTTGGGATTAACGTAACGGTGAATTGCTCGTGTGGAGATAGGCGTGTTTCGAGGGATTATGGATTGTTCTTGACGTATTCTCTAAGAAGTGGTGATAGCTTGACGGAGATAGCGGCGGTCGCCGGAGTATCGCCGGAGATTGTAGAGAGGTATAATATGGCTTCTGATTTTGACGCTGCGAGTGGACTGGTTTTTGTGCCGGCCAAAGATGACAAGGGAAGCTTCTTACCTCTACAGATTAAATCAGGTGAGTGGATAATGGGCACCGTTTCACCACTACCTCATGAAAGAGTATCTAGGGGAGCCATTGCTGGAATATGTATTGGAGCGGTTTCTGGGGTCTTACTATTGGCACTTGTTCTATATGTTATTGTATATAGAAGCACCAAAGTGTCAGAGGCATCCCTTCTTCCTGGTCCAACTGAAGATCAGTATCTTCGGATCGGACAAGGTTCAGGAAGCAGCTTGGATAAGGCTTTAGAATCTATTGATGTGGCTTCTCCAAGGATGACAGGAATCACAGTAGACAAGTCAGTAGAGTTCTCATATGAGGAGCTTGCCAAAGCTACCAATTGTTTTTCTATTTCTAATAAGATTGGTCAAGGTGGCTTTGGATCTGTTTACTATGCAGAACTTCGAGATGAGAAAGCTGCAATTAAGAAGATGGATATGCAAGCTTCAAAAGAATTCCTTGCTGAACTCAAGGTTCTAACACATGTTCACCACTTGAACTTGGTACGCTTAATAGGATATTGTGTTGAGACCTCGTTATTTTTGGTTTATGAGCACATTGAGAATGGAAACTTAGGCCAACATTTACGTGGGTCAGGAAGAGAACCACTGTCATGGTCAACTAGAATTCAAATTGCACTGGATGCTGCAAGAGGACTTGAATACATCCATGAGCATACAGTTCCTGTCTACATTCATCGCGATATTAAATCAGCAAACATTTTGATTGATAAGAACTTTCGTGCAAAGGTTGCGGATTTTGGGCTGACAAGACTTACTGAATATGGAAGTTCTTCACTTCATACACGACTTGTGGGTACATTTGGCTATATGCCTCCAGAATATGCGCAATACGGTGAAGTTTCGGCCAAAGTAGACGTATATGCTTTTGGAGTAGTACTATATGAACTCATATCTGCCAAGGAAGCTATTGTGAAGACTAACGAGCCTGAGCATGAATCAAAAGGACTAGTTTCCTTGTTTGAAGAGGTTTTAACACAGCCAAACGAGGAAGAACAGCTTCGTGAACTTGTTGATCCTAAGCTTGGTGCTAACTACCCTTTTGAATCAGTATATAAGGTGGCTCAACTAGCGAAAGCTTGCACACATGAGAATGCACAACTAAGGCCAAGCATGAGATCCATTGTAGTTGCACTTATGACACTTTCTTCTTCCACAGAGGATTGGGATGTTGGCTCCTTTTATGAATCCCAAGCTATGATGCATCTCACGAGTGGGAGGTAG 1893 0.4237 MTIKPNTKLLIYLSFLIQIQILRVKPNCISGCNLALASYYVGEGTNLTYISKIFNQQISQILKYNPKIPNPDYIQTNIRINIPFRCDCLNGIFLGHTFTYKTQPGDTYHKIAGEAFSNLTNEEWLERVNRYEAIHIPAGVGINVTVNCSCGDRRVSRDYGLFLTYSLRSGDSLTEIAAVAGVSPEIVERYNMASDFDAASGLVFVPAKDDKGSFLPLQIKSGEWIMGTVSPLPHERVSRGAIAGICIGAVSGVLLLALVLYVIVYRSTKVSEASLLPGPTEDQYLRIGQGSGSSLDKALESIDVASPRMTGITVDKSVEFSYEELAKATNCFSISNKIGQGGFGSVYYAELRDEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVETSLFLVYEHIENGNLGQHLRGSGREPLSWSTRIQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRAKVADFGLTRLTEYGSSSLHTRLVGTFGYMPPEYAQYGEVSAKVDVYAFGVVLYELISAKEAIVKTNEPEHESKGLVSLFEEVLTQPNEEEQLRELVDPKLGANYPFESVYKVAQLAKACTHENAQLRPSMRSIVVALMTLSSSTEDWDVGSFYESQAMMHLTSGR 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2260 630 FunFam LysM receptor kinase 2 311 402 - -
Mibi01g2260 630 Gene3D LysM domain 27 88 IPR036779 -
Mibi01g2260 630 SUPERFAMILY Protein kinase-like (PK-like) 311 602 IPR011009 -
Mibi01g2260 630 Pfam Protein tyrosine and serine/threonine kinase 334 601 IPR001245 GO:0004672|GO:0006468
Mibi01g2260 630 Gene3D Phosphorylase Kinase; domain 1 317 402 - -
Mibi01g2260 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Mibi01g2260 630 ProSiteProfiles LysM domain profile. 37 82 IPR018392 -
Mibi01g2260 630 ProSiteProfiles Protein kinase domain profile. 332 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi01g2260 630 SMART serkin_6 332 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi01g2260 630 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Mibi01g2260 630 Gene3D Transferase(Phosphotransferase) domain 1 403 621 - -
Mibi01g2260 630 FunFam PTI1-like tyrosine-protein kinase 3 403 616 - -
Mibi01g2260 630 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 12 616 IPR044812 GO:0019199|GO:0045087
Mibi01g2260 630 Pfam LysM domain 39 83 IPR018392 -
Mibi01g2260 630 CDD STKc_IRAK 338 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2260 Mibi-ChrMibi01 34150678 34160745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2260 9 630 Receptor kinase-like Gene Family AT3G21630 55.134 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Mibi01g2260 PK_Tyr_Ser-Thr 4.9e-48 CL0016