Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2199 ATGATGCAGCCTGGCGGCATGGCTCCCCCAAACATGGCTCAACAACAACCCACCCAGCAACAATACCAACAACAACAACAACAACAGCAGCAACAACAACCGTACATGATGATGCCACCTCAGCCTCAGCCGCCTCCTATGTGGGCCCCCTCCGCCCAAGCTCCTCCGCCACCTCAGCAGGCCCTCGTCCCTCCCCTCCAACAATCCGCCCCTCACTCCCAGCCTACTTCCGCCGATGAGGTCCGTACACTCTGGATCGGCGATTTGGTCTACTGGATGGACGAGAACTATCTCTACAATTGCTTCGCCCATACCGGCGAGGTGTCTTCTGTGAAAGTGATTCGGAATAAGCAAACTAACGTGTCGGAGGGTTATGGTTTTATTGAGTTTTATACACGTGCTGCTGCGGAGAGGATTCTTCAGACGTATAATGGGACGATGATGCCGAATGGTGGGCAAAGCTATAGGTTGAATTGGGCGACTTTTAGTGCGGGTGATAGGCGTCATGATGATACTCCAGATTACACAATTTTTGTTGGGGATTTGGCTGCTGATGTCACGGATTACCTGCTGCTGGAGACTTTCCGGTCCAGGTATCCGTCAGTTAAGGGTGCGAAAGTGGTGATTGATAGGGTCACTGGGCGGACGAAGGGTTATGGTTTTGTCAAGTTCGCTGATGAAAATGAACAGATGCAAGCTATGACTGAGATGCAGGGGGTTATTTGCTCAACAAGACCCATGAGAATTGGACCGGCCACGAACAAAAATGTTGGAGGACAGCAAAAAGCTTCCTATCAGAATCCTCAAGGGTCACAGAACGAGAATGATCCAAATAATACAACTATCTTTGTCGGGAATTTGGATCCTAATGTTTCGGATGATCATTTGAGGCAAGTTTTTGGAGCCTATGGAGAATTGATACATGTGAAGATTCCGGCAGGCAAGAGATGTGGATTTGTCCAATTTGCTGATAGGAGCTGTGCGGAAGAGGCTCTGCGGCAGCTTAATGGATCACTGTTGGGCGGACAAAATGTTCGTCTTTCATGGGGCCGTAGTCCTTCAAACAAACAGGCTCAGCCGGATCCGAGCCAGTACGGAGGATATTATGGGTATGGTCAAGGGTATGAGAATTACGGATACCCGCCTGCTGCAACACAGGATCCCAACATGTATGGAAGCTATCCAGGATATGCTAACTATCAACCACAACAGCAACAGCAGCAAATGGGATATAGCTAA 1239 0.4939 MMQPGGMAPPNMAQQQPTQQQYQQQQQQQQQQQPYMMMPPQPQPPPMWAPSAQAPPPPQQALVPPLQQSAPHSQPTSADEVRTLWIGDLVYWMDENYLYNCFAHTGEVSSVKVIRNKQTNVSEGYGFIEFYTRAAAERILQTYNGTMMPNGGQSYRLNWATFSAGDRRHDDTPDYTIFVGDLAADVTDYLLLETFRSRYPSVKGAKVVIDRVTGRTKGYGFVKFADENEQMQAMTEMQGVICSTRPMRIGPATNKNVGGQQKASYQNPQGSQNENDPNNTTIFVGNLDPNVSDDHLRQVFGAYGELIHVKIPAGKRCGFVQFADRSCAEEALRQLNGSLLGGQNVRLSWGRSPSNKQAQPDPSQYGGYYGYGQGYENYGYPPAATQDPNMYGSYPGYANYQPQQQQQQMGYS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2199 412 FunFam Polyadenylate-binding protein RBP45C 259 362 - -
Mibi01g2199 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 352 IPR000504 GO:0003723
Mibi01g2199 412 CDD RRM1_SECp43_like 83 163 - -
Mibi01g2199 412 MobiDBLite consensus disorder prediction 37 64 - -
Mibi01g2199 412 FunFam Polyadenylate-binding protein RBP45 9 166 - -
Mibi01g2199 412 MobiDBLite consensus disorder prediction 391 412 - -
Mibi01g2199 412 MobiDBLite consensus disorder prediction 65 79 - -
Mibi01g2199 412 MobiDBLite consensus disorder prediction 1 79 - -
Mibi01g2199 412 SUPERFAMILY RNA-binding domain, RBD 62 161 IPR035979 GO:0003676
Mibi01g2199 412 CDD RRM3_NGR1_NAM8_like 279 350 - -
Mibi01g2199 412 MobiDBLite consensus disorder prediction 250 281 - -
Mibi01g2199 412 FunFam Polyadenylate-binding protein RBP45C 167 258 - -
Mibi01g2199 412 SUPERFAMILY RNA-binding domain, RBD 265 378 IPR035979 GO:0003676
Mibi01g2199 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 345 IPR000504 GO:0003723
Mibi01g2199 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 241 IPR000504 GO:0003723
Mibi01g2199 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 150 IPR000504 GO:0003723
Mibi01g2199 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 162 IPR000504 GO:0003723
Mibi01g2199 412 Gene3D - 8 166 IPR012677 -
Mibi01g2199 412 MobiDBLite consensus disorder prediction 9 36 - -
Mibi01g2199 412 SUPERFAMILY RNA-binding domain, RBD 159 270 IPR035979 GO:0003676
Mibi01g2199 412 MobiDBLite consensus disorder prediction 254 281 - -
Mibi01g2199 412 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 73 365 - -
Mibi01g2199 412 SMART rrm1_1 281 348 IPR000504 GO:0003723
Mibi01g2199 412 SMART rrm1_1 83 158 IPR000504 GO:0003723
Mibi01g2199 412 SMART rrm1_1 176 250 IPR000504 GO:0003723
Mibi01g2199 412 Gene3D - 261 361 IPR012677 -
Mibi01g2199 412 SUPERFAMILY beta-sandwich domain of Sec23/24 3 69 - -
Mibi01g2199 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 254 IPR000504 GO:0003723
Mibi01g2199 412 Gene3D - 167 260 IPR012677 -
Mibi01g2199 412 MobiDBLite consensus disorder prediction 396 412 - -
Mibi01g2199 412 CDD RRM2_SECp43_like 174 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2199 Mibi-ChrMibi01 33252469 33256125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2199 44 359 Eukaryotic Initiation Factors Gene Family AT1G22760 27.928 2.40e-27 112