Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2189 ATGCCTGGTGATATCGCTCAAAAGCCACTTGCTCCTTCGATTTTGGATCGCTTCAAGGCTCTTCTCAAGCGTCGCGACGATGAACTAGGGTTTTTGTCCGATGACGATGTGCCCACTGAGGAGATTGTACGGATTTATGAGATTGTTTTGTCTGAGCTTACTTTGAATTCGAAGCCTATTATTACCGAACTTACCATTATTGCTGGAGATCAGAAGGAGCATGGGAAGGGTATTGCTGATGCGATTTGTGATCGGATTCTTGAGGTGCCTTCGGAGCAAAAGCTTCCTTCATTATATCTTTTAGACAGTATTGTGAAGAATATTGGCGGAGAGTATGTTAGATACTTCTCCTCACGTCTTCCTGATGTGTTCTGTGAGGCTTATCGGCAAGTTCAGCCTAATTTGCACCATTCAATGCGTCATCTCTTTGGTACCTGGTCAACAGTCTTTCCAACTTCTGTTCTTCGCAAGATTGAAGTGCAGCTGCATTTTTCTCAAGCAGTTAATAATCAGAACATATCATCTCGCATTAATCCCCCTAGGGTGTCTGAAGCTACACAGCGAAGTCATGGCATTCATGTTAATCCAAAATACTTGCGGCAATTGGAAAACTCAACCATGGACACTGATGGGGTTGAAATGTTGGATTCAACAGGAAGCGTTGGGCATACAAATTTTGGCCCTGGAACTAATAAGATGCAGCAGGCCTCAATTAGCAGGCATGGAAAACATTATCCTGGCGATGACCGGAATCAATTCCAATTTTCTACAAATGGGCATCAACGCCAAAGTCCAAGAGCCCTTATTGATGCTTATGGCAGTGACAAAAGGACAGAAACTGCAAGCAACAAACCATTGGTTGAACCGCTTGACATATATGGTATGGAAAACAAGACGGTGTCACCATCATGGCAGAATACTGAAGAGGAGGAGTTTAACTGGGAAGACATGAGTCCAGCGTTAGTGGAGCATAGGAGAAGCAATGGCATTTTACCACCAATTATGTTAGCCAGGGAAAGATCTAGTGGCATTGTTGCAGCTAATGCTGTTGCATTGGGTCAGGACACCAGAAGTGGTTGGAATGGTGGTGGATCGTTGGATCAGATAAGTGGATTCCAAAATCTCGGTCGGGCCTCCCACCCTCCTCATGATGCCATGAGGATTTCTCATCATTTGCCAAATTCTTCACAACATCTCGTTAGTATTAGAGGTCGAACAAGGAATACTCATGTATCTCCTATTGATAGCATTCCAATTACTAAAGTAAACTCATATGGGCTTGATATTCGCCCCCCAACTTTACCTGCTTCTTTTCGAACTAGGCCCCCTATAAATGTGCATGCTAGTCGTCCACCATCCTTAAATTCTTCATTGCAAAAACAAGTCGGGAACCAATTTGAAGCAATAAATAGTAGTAGCACCATTTTAGATCAAGGTCCTACTAAATCTTCATTCATCACTGAACAGCTATTGGACGGTGGTGAGAACAATAATGTTGGTAAATTAACGATTCCTCAGATTCCTAATCAGCTATCAGGACTGATTTCATCAAACCAGCATAACCGTGGACAAGCATTACAACCTCAAATTTTTCCACCTCAGGATGTGCGAGGAAGTTTTTCTGATTCACAAGCTCCAGCAGCTTCTCGTTTTAGTCATGGGAGCTCTTTGCAAAGACACGGTCCTGCTATCAGTGCAACTGTGTCAATGTCATTACCTATAGGACAGTTTCCTTTACCAGTCCAAAACATGGCAAACAACACTTTCCCTATGCAGCGGGGAGCCTTGCCTACATTTCCAGCTCCTCGTCCTCCATTACAAGTGATGCCTCATAAAAATGATAGTCCATATGCCTCAAGCCAACAGCCAGCTGGTGCATTGTCTGGGCTGATCAATTCACTAATGGCACAAGGTTTGATCTCATTGACTGGACAAGCCACTGTGCAGGATTCTGTTGGAACAGAATTCAATCCTGATGTTCTGAAGATCCGGCATGAGTCTGCAATTAATGCTTTATATTCTGACCTCCCCCGACAATGCACAACTTGTGGCCTTCGGTTCAAGTCTCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTGACTAAGAATCGGATGTCTAAAAATCGTAAGCAGAAACCTTCTCGCAAGTGGTTTGTGAGTGAGAAAATGTGGCTTAGTGGTGCAGAGGCATTGGGAACTGAAGCAGTACCCGGTTTCTTGCCCACTGAGACCATTGAGGAAAATAAAGAAGATGAAGAGATGGCCGTGCCAGCTGATGAAGACCAGAATACATGTGCGTTATGTGGAGAGCCTTTTGAAGAGTTTTATAGTGATGAAACTGAGGAATGGATGTACAGAGGAGCTGTATATCTTAATGTGCCCAAGGGAATGGTGGCAGGCGTGGATAGGTCACAGTTAGGTCCAATCGTGCATGCTAAATGCAGATCTGAATCTAGTGCTGTCCCTGCTGAAGAATTTAGACAGGATGATGGGGGAGATGATGAAGAGGGTAGTCAAAGAAAACGAATGCGGAGTTAA 2541 0.44 MPGDIAQKPLAPSILDRFKALLKRRDDELGFLSDDDVPTEEIVRIYEIVLSELTLNSKPIITELTIIAGDQKEHGKGIADAICDRILEVPSEQKLPSLYLLDSIVKNIGGEYVRYFSSRLPDVFCEAYRQVQPNLHHSMRHLFGTWSTVFPTSVLRKIEVQLHFSQAVNNQNISSRINPPRVSEATQRSHGIHVNPKYLRQLENSTMDTDGVEMLDSTGSVGHTNFGPGTNKMQQASISRHGKHYPGDDRNQFQFSTNGHQRQSPRALIDAYGSDKRTETASNKPLVEPLDIYGMENKTVSPSWQNTEEEEFNWEDMSPALVEHRRSNGILPPIMLARERSSGIVAANAVALGQDTRSGWNGGGSLDQISGFQNLGRASHPPHDAMRISHHLPNSSQHLVSIRGRTRNTHVSPIDSIPITKVNSYGLDIRPPTLPASFRTRPPINVHASRPPSLNSSLQKQVGNQFEAINSSSTILDQGPTKSSFITEQLLDGGENNNVGKLTIPQIPNQLSGLISSNQHNRGQALQPQIFPPQDVRGSFSDSQAPAASRFSHGSSLQRHGPAISATVSMSLPIGQFPLPVQNMANNTFPMQRGALPTFPAPRPPLQVMPHKNDSPYASSQQPAGALSGLINSLMAQGLISLTGQATVQDSVGTEFNPDVLKIRHESAINALYSDLPRQCTTCGLRFKSQEEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSEKMWLSGAEALGTEAVPGFLPTETIEENKEDEEMAVPADEDQNTCALCGEPFEEFYSDETEEWMYRGAVYLNVPKGMVAGVDRSQLGPIVHAKCRSESSAVPAEEFRQDDGGDDEEGSQRKRMRS 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2189 846 MobiDBLite consensus disorder prediction 817 846 - -
Mibi01g2189 846 MobiDBLite consensus disorder prediction 536 558 - -
Mibi01g2189 846 MobiDBLite consensus disorder prediction 603 624 - -
Mibi01g2189 846 FunFam polyadenylation and cleavage factor homolog 4 35 163 - -
Mibi01g2189 846 Gene3D - 32 163 IPR008942 -
Mibi01g2189 846 ProSitePatterns Zinc finger C2H2 type domain signature. 680 700 IPR013087 -
Mibi01g2189 846 CDD CID_Pcf11 46 163 - -
Mibi01g2189 846 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 41 833 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Mibi01g2189 846 MobiDBLite consensus disorder prediction 819 846 - -
Mibi01g2189 846 MobiDBLite consensus disorder prediction 436 455 - -
Mibi01g2189 846 Pfam CID domain 55 156 IPR006569 -
Mibi01g2189 846 SMART 558neu5 41 163 IPR006569 -
Mibi01g2189 846 SUPERFAMILY ENTH/VHS domain 39 163 IPR008942 -
Mibi01g2189 846 ProSiteProfiles CID domain profile. 38 166 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2189 Mibi-ChrMibi01 33139045 33146047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2189 618 846 C2H2 Transcription Factor Family AT4G04885 72.926 5.52e-109 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi01g2189 CID 2.4e-11 CL0020