Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2181 ATGAACAGATTCCAAAACGATGCCGCCTCTTTAGCCACTTGTGACACGTCATGGACATGCGCTTCATCCCCTTCTTTCTTCGCATTACAATTTCATATTCTTCTTCGTTTCCTCTCTGAGAAAGCTTATCAAAACTCGTTCAAGATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGAGCTCTGACACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAGCAGAGGCTGATCTTCGCCGGAAAGCAACTTGAGGACGGCCGTACCTTGGCTGACTACAACATCCAAAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTCCGTGGTGGCATGCAAATCTTCGTCAAGACTCTCACCGGCAAGACCATTACCTTGGAAGTTGAGAGCTCTGACACCATTGACAACGTTAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCAGACCAGCAAAGACTCATCTTTGCAGGAAAGCAGCTTGAGGATGGACGTACCCTTGCCGACTACAACATCCAGAAAGAATCCACACTCCACCTTGTCTTGCGTCTGCGTGGTGGTATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGAGCTCTGACACAATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTTGCAGGAAAGCAACTTGAGGACGGCCGTACCCTTGCCGACTACAACATCCAGAAGGAGTCTACCCTCCACCTTGTATTGCGTCTTCGTGGTGGTATGCAGATATTTGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTTGAGAGCTCTGACACCATTGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAACAGAGGCTCATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTTTGGCTGATTATAACATCCAGAAGGAGTCTACACTCCACCTTGTCTTGCGTCTGCGTGGTGGTATGCAGATTTTCGTGAAGACCCTTACAGGAAAGACCATTACTCTAGAGGTGGAGAGCTCTGACACGATTGACAACGTGAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACCCTTGCAGACTACAACATTCAGAAGGAATCAACCCTTCATCTTGTCCTTCGTCTGAGAGGAGGCATGCAGATTTTTGTTAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTGGAGAGTTCAGACACTATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTTATCTTTGCAGGGAAGCAGCTTGAAGACGGTAGGACCCTTGCTGATTACAACATTCAGAAGGAGTCCACCCTTCACCTTGTGCTCCGCCTTCGTGGTGGTAATTAA 1518 0.4967 MNRFQNDAASLATCDTSWTCASSPSFFALQFHILLRFLSEKAYQNSFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2181 505 FunFam Polyubiquitin 3 353 428 - -
Mibi01g2181 505 ProSiteProfiles Ubiquitin domain profile. 49 124 IPR000626 GO:0005515
Mibi01g2181 505 ProSiteProfiles Ubiquitin domain profile. 125 200 IPR000626 GO:0005515
Mibi01g2181 505 ProSiteProfiles Ubiquitin domain profile. 201 276 IPR000626 GO:0005515
Mibi01g2181 505 ProSiteProfiles Ubiquitin domain profile. 277 352 IPR000626 GO:0005515
Mibi01g2181 505 FunFam Polyubiquitin 3 429 504 - -
Mibi01g2181 505 ProSitePatterns Ubiquitin domain signature. 303 328 IPR019954 -
Mibi01g2181 505 ProSiteProfiles Ubiquitin domain profile. 353 428 IPR000626 GO:0005515
Mibi01g2181 505 CDD Ubl_ubiquitin 125 200 - -
Mibi01g2181 505 ProSiteProfiles Ubiquitin domain profile. 429 504 IPR000626 GO:0005515
Mibi01g2181 505 FunFam Polyubiquitin 3 49 124 - -
Mibi01g2181 505 SUPERFAMILY Ubiquitin-like 352 428 IPR029071 -
Mibi01g2181 505 FunFam Polyubiquitin 3 277 352 - -
Mibi01g2181 505 ProSitePatterns Ubiquitin domain signature. 455 480 IPR019954 -
Mibi01g2181 505 CDD Ubl_ubiquitin 277 352 - -
Mibi01g2181 505 ProSitePatterns Ubiquitin domain signature. 75 100 IPR019954 -
Mibi01g2181 505 PANTHER UBIQUITIN 201 280 - -
Mibi01g2181 505 Gene3D - 353 428 - -
Mibi01g2181 505 Gene3D - 201 276 - -
Mibi01g2181 505 Gene3D - 277 352 - -
Mibi01g2181 505 Gene3D - 429 505 - -
Mibi01g2181 505 Gene3D - 41 124 - -
Mibi01g2181 505 Gene3D - 125 200 - -
Mibi01g2181 505 SMART ubq_7 353 424 IPR000626 GO:0005515
Mibi01g2181 505 SMART ubq_7 49 120 IPR000626 GO:0005515
Mibi01g2181 505 SMART ubq_7 125 196 IPR000626 GO:0005515
Mibi01g2181 505 SMART ubq_7 429 500 IPR000626 GO:0005515
Mibi01g2181 505 SMART ubq_7 201 272 IPR000626 GO:0005515
Mibi01g2181 505 SMART ubq_7 277 348 IPR000626 GO:0005515
Mibi01g2181 505 CDD Ubl_ubiquitin 429 504 - -
Mibi01g2181 505 ProSitePatterns Ubiquitin domain signature. 227 252 IPR019954 -
Mibi01g2181 505 SUPERFAMILY Ubiquitin-like 428 504 IPR029071 -
Mibi01g2181 505 FunFam Polyubiquitin 3 201 276 - -
Mibi01g2181 505 PRINTS Ubiquitin signature 59 79 IPR019956 -
Mibi01g2181 505 PRINTS Ubiquitin signature 80 100 IPR019956 -
Mibi01g2181 505 PRINTS Ubiquitin signature 101 122 IPR019956 -
Mibi01g2181 505 SUPERFAMILY Ubiquitin-like 47 124 IPR029071 -
Mibi01g2181 505 SUPERFAMILY Ubiquitin-like 199 276 IPR029071 -
Mibi01g2181 505 ProSitePatterns Ubiquitin domain signature. 379 404 IPR019954 -
Mibi01g2181 505 SUPERFAMILY Ubiquitin-like 124 200 IPR029071 -
Mibi01g2181 505 CDD Ubl_ubiquitin 49 124 - -
Mibi01g2181 505 SUPERFAMILY Ubiquitin-like 276 352 IPR029071 -
Mibi01g2181 505 CDD Ubl_ubiquitin 353 428 - -
Mibi01g2181 505 Pfam Ubiquitin family 355 426 IPR000626 GO:0005515
Mibi01g2181 505 Pfam Ubiquitin family 51 122 IPR000626 GO:0005515
Mibi01g2181 505 Pfam Ubiquitin family 203 274 IPR000626 GO:0005515
Mibi01g2181 505 Pfam Ubiquitin family 279 350 IPR000626 GO:0005515
Mibi01g2181 505 Pfam Ubiquitin family 431 502 IPR000626 GO:0005515
Mibi01g2181 505 Pfam Ubiquitin family 127 198 IPR000626 GO:0005515
Mibi01g2181 505 ProSitePatterns Ubiquitin domain signature. 151 176 IPR019954 -
Mibi01g2181 505 CDD Ubl_ubiquitin 201 276 - -
Mibi01g2181 505 FunFam Polyubiquitin 3 125 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2181 Mibi-ChrMibi01 32984233 32986584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2181 429 504 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 1.85e-46 156