LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi01g2181	ATGAACAGATTCCAAAACGATGCCGCCTCTTTAGCCACTTGTGACACGTCATGGACATGCGCTTCATCCCCTTCTTTCTTCGCATTACAATTTCATATTCTTCTTCGTTTCCTCTCTGAGAAAGCTTATCAAAACTCGTTCAAGATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGAGCTCTGACACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAGCAGAGGCTGATCTTCGCCGGAAAGCAACTTGAGGACGGCCGTACCTTGGCTGACTACAACATCCAAAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTCCGTGGTGGCATGCAAATCTTCGTCAAGACTCTCACCGGCAAGACCATTACCTTGGAAGTTGAGAGCTCTGACACCATTGACAACGTTAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCAGACCAGCAAAGACTCATCTTTGCAGGAAAGCAGCTTGAGGATGGACGTACCCTTGCCGACTACAACATCCAGAAAGAATCCACACTCCACCTTGTCTTGCGTCTGCGTGGTGGTATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGAGCTCTGACACAATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTTGCAGGAAAGCAACTTGAGGACGGCCGTACCCTTGCCGACTACAACATCCAGAAGGAGTCTACCCTCCACCTTGTATTGCGTCTTCGTGGTGGTATGCAGATATTTGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTTGAGAGCTCTGACACCATTGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAACAGAGGCTCATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTTTGGCTGATTATAACATCCAGAAGGAGTCTACACTCCACCTTGTCTTGCGTCTGCGTGGTGGTATGCAGATTTTCGTGAAGACCCTTACAGGAAAGACCATTACTCTAGAGGTGGAGAGCTCTGACACGATTGACAACGTGAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACCCTTGCAGACTACAACATTCAGAAGGAATCAACCCTTCATCTTGTCCTTCGTCTGAGAGGAGGCATGCAGATTTTTGTTAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTGGAGAGTTCAGACACTATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTTATCTTTGCAGGGAAGCAGCTTGAAGACGGTAGGACCCTTGCTGATTACAACATTCAGAAGGAGTCCACCCTTCACCTTGTGCTCCGCCTTCGTGGTGGTAATTAA	1518	0.4967	MNRFQNDAASLATCDTSWTCASSPSFFALQFHILLRFLSEKAYQNSFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGN	505

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi01g2181	505	FunFam	Polyubiquitin 3	353	428	-	-
	Mibi01g2181	505	ProSiteProfiles	Ubiquitin domain profile.	49	124	IPR000626	GO:0005515
	Mibi01g2181	505	ProSiteProfiles	Ubiquitin domain profile.	125	200	IPR000626	GO:0005515
	Mibi01g2181	505	ProSiteProfiles	Ubiquitin domain profile.	201	276	IPR000626	GO:0005515
	Mibi01g2181	505	ProSiteProfiles	Ubiquitin domain profile.	277	352	IPR000626	GO:0005515
	Mibi01g2181	505	FunFam	Polyubiquitin 3	429	504	-	-
	Mibi01g2181	505	ProSitePatterns	Ubiquitin domain signature.	303	328	IPR019954	-
	Mibi01g2181	505	ProSiteProfiles	Ubiquitin domain profile.	353	428	IPR000626	GO:0005515
	Mibi01g2181	505	CDD	Ubl_ubiquitin	125	200	-	-
	Mibi01g2181	505	ProSiteProfiles	Ubiquitin domain profile.	429	504	IPR000626	GO:0005515

Showing 1 to 10 of 52 entries

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi01g2181	Mibi-ChrMibi01	32984233	32986584	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi01g2181	429	504	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	100.000	1.85e-46	156

Showing 1 to 1 of 1 entries