Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2178 ATGTTTTTCTTCATCATTCCCATCTTATTTATTCACCTTGTCTCAGGTTCAGACTCTCTCTTCACTTGGTGCCCTCCTGAATTCCCAGATTATACACTGAACTCTACATTTCATAACAACCTTGAGCTTCTTCTGGGATCACTTTCTAACAACATTTCAGCCTCAGGTTTCTATGACACATCAATTGGAGAAGACACAGATAAGGTCTATGGGCTTGCACTTTGCAGAGGAGACATAAATTCCACAATCTGTAAGGACTGTGTTGAGAAAGCAAGCCAAGATATACTCAACACATGTAAGAGTCAAGATGCTATGATATGGTATGATCTCTGTCAAGTAAGATACTCGTTTCAGATGTTCATTTCAAGGATGGTTTATACCGGGAAGTATCCTGATGAGAATAATCAGGCAAAGAATGTGTCGGATCCTGCTCGATTGGGCCAGGTTCTGACGTACTTAATGAATAACCTGTCCAATGAGGCTGCTTTTGTTCCTTCCAAGAACATGTTTGCTTCTGGGGAAATTGAATTTTCCCAGAAAATTACAATTTATGGTCTGGTACAATGTACACGGGACATCTCTGGACAATCATGCTATAACTGTTTGAATTCTGCTCTGGGAGACCTTGAAGCTTGTTGCTCATCCCGTGAATTTGGGATAGTTCTTAGCCGAACTTGCAATGTGAGGTTTGGATTGTCTCAGTTTTTCAATACTTCTTCTCAGTACCTTGTGGTTTACCCAACTTCAAAAGGAGGGAGACTGAAAACATGGATTCTTGTTCTGATTATATTTGTATCAGTGTTCATATTAGCACTTCTTGCTGCTTTCTGCATTGCATTTTTCTACAAAAAACAAGGGGAAGACAGAGATGACGAAAAAAGTGAAAAGATTCTACTGCAACAATTGGCAACTCCCAAGAGTGTAACAATTACACAAGATGGAGAATTAATTAGCTCTGAAGAACTTGTGTTCATGAGTTTTGCAACAATTAAGTTTGCCACCAATGACTTTTCTGATTCAAACAAGCTCGGACAAGGAGGTTTTGGTTCTGTGTACAAGGGTGTTCTTTCGGATGGAAATGAAGTAGCAGTTAAAAGGTTATCAAGGAAGTCTTGGCAAGGCACAGAAGAATTCAAAAATGAGGTCATTCTTATTGCTAAACTTCAGCATAAGAATCTGGTGAAGCTGTTAGGATGTGGCATGGAAGGAGAAGAGAAGTTTCTCATATATGAATACATGTCCCATCAAAGCCTTGACAAATTCATCTTCGATTCAGAAAAACGTTCAGAGCTTGATTGGAATACATGTTATGGCATTATCATGGGTATAGCTAGGGGATTACTTTATCTTCATGAAGAGTCGAGACTTAGAATCATTCATAGAGATTTGAAACCAAATAACATATTGCTTGACCACGACATGGTTGCAAAGATATCAGATTTTGGTATGGCAAGAATATTTTGTGAAAATCAAAGAACTGCTAACACCAAAAGAGTTGTGGGAACATATGGATACATGGCTCCAGAATATGCAATGGGAGGATTGTTCTCAGTGAAATCTGATATCTTCAGCTTCGGTGTCATTTTGCTTGAGATCATCAGCGGAAATAGAAGCAGTGGCTTTTATGCAACTGAACTTGCCTCTACCCTTTTAGCATATGCATGGAAGTTATGGAGTGAAGGTAAAGAAATGGAATTTTTGGACCCTCATTTACTGGAAACATGTCTTTCTTCAGAAATTTTAAGGTGCATGCACATAGGACTGTTATGTGTACAAGAAGACCCAGAAGACAGACCCACCACGTCAGATGTTATAGTTCTGTTAGGAAGTGAATCAATGTCTCTTCCACGACCAAAACAACCTGCATTTTCTATGGGTAAATCAGCTAAAGTTGATCCATCATTGTTGACAACTTCCTCCGTTAATCATATAGTGTTCTCTAGTGTTCAGCCTAGATGA 1959 0.39 MFFFIIPILFIHLVSGSDSLFTWCPPEFPDYTLNSTFHNNLELLLGSLSNNISASGFYDTSIGEDTDKVYGLALCRGDINSTICKDCVEKASQDILNTCKSQDAMIWYDLCQVRYSFQMFISRMVYTGKYPDENNQAKNVSDPARLGQVLTYLMNNLSNEAAFVPSKNMFASGEIEFSQKITIYGLVQCTRDISGQSCYNCLNSALGDLEACCSSREFGIVLSRTCNVRFGLSQFFNTSSQYLVVYPTSKGGRLKTWILVLIIFVSVFILALLAAFCIAFFYKKQGEDRDDEKSEKILLQQLATPKSVTITQDGELISSEELVFMSFATIKFATNDFSDSNKLGQGGFGSVYKGVLSDGNEVAVKRLSRKSWQGTEEFKNEVILIAKLQHKNLVKLLGCGMEGEEKFLIYEYMSHQSLDKFIFDSEKRSELDWNTCYGIIMGIARGLLYLHEESRLRIIHRDLKPNNILLDHDMVAKISDFGMARIFCENQRTANTKRVVGTYGYMAPEYAMGGLFSVKSDIFSFGVILLEIISGNRSSGFYATELASTLLAYAWKLWSEGKEMEFLDPHLLETCLSSEILRCMHIGLLCVQEDPEDRPTTSDVIVLLGSESMSLPRPKQPAFSMGKSAKVDPSLLTTSSVNHIVFSSVQPR 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2178 652 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 303 412 - -
Mibi01g2178 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Mibi01g2178 652 ProSiteProfiles Gnk2-homologous domain profile. 19 120 IPR002902 -
Mibi01g2178 652 ProSiteProfiles Protein kinase domain profile. 337 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi01g2178 652 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 629 - -
Mibi01g2178 652 SUPERFAMILY Protein kinase-like (PK-like) 319 607 IPR011009 -
Mibi01g2178 652 SMART serkin_6 337 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi01g2178 652 FunFam Cysteine-rich receptor-like protein kinase 10 132 235 - -
Mibi01g2178 652 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Mibi01g2178 652 FunFam Uncharacterized protein 413 614 - -
Mibi01g2178 652 CDD STKc_IRAK 343 605 - -
Mibi01g2178 652 Gene3D Transferase(Phosphotransferase) domain 1 413 616 - -
Mibi01g2178 652 Pfam Salt stress response/antifungal 140 231 IPR002902 -
Mibi01g2178 652 Pfam Salt stress response/antifungal 30 117 IPR002902 -
Mibi01g2178 652 Pfam Protein tyrosine and serine/threonine kinase 340 605 IPR001245 GO:0004672|GO:0006468
Mibi01g2178 652 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 17 120 - -
Mibi01g2178 652 ProSiteProfiles Gnk2-homologous domain profile. 128 235 IPR002902 -
Mibi01g2178 652 Gene3D Phosphorylase Kinase; domain 1 300 412 - -
Mibi01g2178 652 Gene3D - 129 235 IPR038408 -
Mibi01g2178 652 Gene3D - 21 120 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2178 Mibi-ChrMibi01 32940705 32943818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2178 26 625 Receptor kinase-like Gene Family AT4G23230 42.742 1.03e-169 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mibi01g2178 PK_Tyr_Ser-Thr 1.9e-48 CL0016