Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2156 ATGAAGAGAAAGTCAAGTTCAGGTCGCCAAAAGATCCCTATAGAGAAAATACCAAAGAAAAGCCATCTTCAAGTCACATTCTCAAAGCGTCGCTCAGGACTTTTCAAGAAAGCCAGTGAGCTTTGCACACTTTGTGGCGTTGAGATAGCCATCATCGTCTTCTCTCCGGCAGATAAGGCCTTCTCCTTTGGCCACCCGGACGTAGAATCCATCATTGACCGCTATATAAGCCGAAACCCTACATCGGAATCCGGTGCAAACCACCCTTTGGTGGAGGCGCACCGGAATGCGAACGTCCGGGAGCTTAACATGCAGCTAACACAGCTTCTAGGGCAAGTGGAGATGGAGAGGAAGAGAGGAGAAGAGTTAGATCAAGTGAAGAAGGCAAGGCAGAGACAGTTTTGGTGGGAAAACCCTATTGAGGAATTAGGGTTTAATGAGTTGCAACAAGTTTTGGTTTCAATGGAGGAACTGAAGAAGGAGTTAGGGAAAATGGCAAGCAAGATGTTAATGGAGCATAATAGTTTGGCTTCATCAGTTGATTCATCAGTTATTGGAGTAGCACATAATGGTGGAGTACTTGGACGTTATAATACTAATGATGTGTTTGAGGATAAACATGTTGTTATGGCCAGTATTAATGCTGCTTCCTCCAGTAATATTCATCCTCAACATGCCTTTAACAATGATCTCAATTGTAGGCATGGATATCTATGA 717 0.4379 MKRKSSSGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPDVESIIDRYISRNPTSESGANHPLVEAHRNANVRELNMQLTQLLGQVEMERKRGEELDQVKKARQRQFWWENPIEELGFNELQQVLVSMEELKKELGKMASKMLMEHNSLASSVDSSVIGVAHNGGVLGRYNTNDVFEDKHVVMASINAASSSNIHPQHAFNNDLNCRHGYL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2156 238 Gene3D - 88 184 - -
Mibi01g2156 238 CDD MADS_MEF2_like 8 75 IPR033896 GO:0000977|GO:0045944
Mibi01g2156 238 Gene3D - 19 87 IPR036879 GO:0003677|GO:0046983
Mibi01g2156 238 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Mibi01g2156 238 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Mibi01g2156 238 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Mibi01g2156 238 PANTHER MADS BOX PROTEIN 9 163 - -
Mibi01g2156 238 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Mibi01g2156 238 Coils Coil 99 119 - -
Mibi01g2156 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Mibi01g2156 238 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Mibi01g2156 238 FunFam Agamous-like MADS-box protein AGL62 19 85 - -
Mibi01g2156 238 SUPERFAMILY SRF-like 8 90 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2156 Mibi-ChrMibi01 32180972 32181688 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2156 4 238 Type I MADS-box Gene Family AT5G60440 42.510 4.15e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi01g2156 SRF-TF 3.1e-23 No_clan