Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2155 ATGGCAGACCCACCAATTCCACCTAAGAAGACAAAAGGTCAGCAGAAAATAGAGCTCAAACTCATAGAAGACCCTAAAAAACGAAGTGTCACATTCTCAAAACGTAAAGGTGGCCTTTTCAGAAAGGCAGAAGAACTGTACAATCTCACCGGCGCCGAGGTGGCTATCATGATCATCTCTCCGGGAGGCAAAGCTTTCACAAACGAAAATCCCGACGCGTACAGAGTGATAAACAGGTACAAAGATCAAGCGACGCCGTCGCCGAGGATAGAACAGCAAAAAGCCGAACTAAGGGAACTATTGAAACAGTTGAAAATTGAGGACAAGCGAACTAAGGCACTAAGGAATAATAGAAATCACATGAGGACCCAAACTTTCATGGCTGCACCATCTTTTACATATACAAGGGCCCAAACAGAAGAGATGAAGCAGAGATTGTTGTTACTTAACAATGTACTCTCTCACCCTCCTCCGGGCTTCTTCAACTCATATTCAATCTTTCCCCCGCAACCGCCACCAGATTCGACATTGGAAATTCTGAGTTCTTCCTTCCCAGCGATGTTGACACATAATCCTGAAATCCAAGGGAGTTTTGGGTTTTCATGTGGGCCCTTAATAATGGAACCGGTGATTGGGAATCAGAATTTTGGAGGTAACATTGTACTTACACCCTCTGGTAATTTCTGCAGAAGTGATTCATCATTGGTGGCGCAAGCAGGGACTTATCAGAATCATATGTCACAAAATAACATGTGGCCGAACAGCCATGGAAACTTCCAAACCGGCACACCATCGTCGATGTTGCCGGTGGCTGCTCAGAATCAAATGTCTCATCAAGACATGTTTGCTACACCTCATGATAGTATGATAGATGCATCGTCCTTGGTGGCGCCGGTAGGGACCCATCAGAATCCTATGTTCACGGATATCATGTGGCCAAACAGCCATGGAAACCTCTATACCGGCGAATCATCTTCAATGTTTCCGGTGGTTACTCAGGATCAAATGACTCATCAAGACAACATGTTTGCTACACCTCATGATAGCACGATCTTGCCGATGGCAACTCAGAATCAAATGTCACAAAATAACATGATTGTTACACATCATGATAGTATGATGTTACCGGTGGCTACTCAGAATCAAATGTCACAAGATAACATGATTAATATTGTTACACCTCATGATAGTATGATGCTACCGGTGGCTACTCAGAACCAAATGTCACAAGATAACATGATGGTTACACCTTCTGATAATATGATCTTGGCAGATAATTATGATGACTTATTTATTAAAAGTGGATTATTCTTGACGTCGGAAGAACCGACTCAGCTTAATCAAATTGTGGATGAAAACATGATGATTCCGCCACATAAGAACTTTTATACTTTTGCATCCTCGTCGGTGGTGGTACCGCCACCGCCGGCACCGGTTGATGAAAACATTATCGCTTCGCCTCCCCACAACGCATATGAATCATCGTTGGTGCCACCAGCTGACGATGAAAGCAAGTTTTTTGAGGAAAGGTTGATGATGTTTCTGTATGGCGACGATAAAGTCAATGGAAACAGTTTTTCAATGGGGCTGCCGGAGGAAAGTCATAGGTTCAATGGAAATGTGATTCCTCCGCCGCAGCCTTCGCCTTGTGTTGGATATGGTGGTGGTGGTGCTGCTACTGGTGAACCTTTGGGGTTCAACTGA 1704 0.4413 MADPPIPPKKTKGQQKIELKLIEDPKKRSVTFSKRKGGLFRKAEELYNLTGAEVAIMIISPGGKAFTNENPDAYRVINRYKDQATPSPRIEQQKAELRELLKQLKIEDKRTKALRNNRNHMRTQTFMAAPSFTYTRAQTEEMKQRLLLLNNVLSHPPPGFFNSYSIFPPQPPPDSTLEILSSSFPAMLTHNPEIQGSFGFSCGPLIMEPVIGNQNFGGNIVLTPSGNFCRSDSSLVAQAGTYQNHMSQNNMWPNSHGNFQTGTPSSMLPVAAQNQMSHQDMFATPHDSMIDASSLVAPVGTHQNPMFTDIMWPNSHGNLYTGESSSMFPVVTQDQMTHQDNMFATPHDSTILPMATQNQMSQNNMIVTHHDSMMLPVATQNQMSQDNMINIVTPHDSMMLPVATQNQMSQDNMMVTPSDNMILADNYDDLFIKSGLFLTSEEPTQLNQIVDENMMIPPHKNFYTFASSSVVVPPPPAPVDENIIASPPHNAYESSLVPPADDESKFFEERLMMFLYGDDKVNGNSFSMGLPEESHRFNGNVIPPPQPSPCVGYGGGGAATGEPLGFN 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2155 567 SUPERFAMILY SRF-like 13 86 IPR036879 GO:0003677|GO:0046983
Mibi01g2155 567 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
Mibi01g2155 567 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Mibi01g2155 567 PANTHER MADS BOX PROTEIN 15 128 - -
Mibi01g2155 567 Gene3D - 24 106 IPR036879 GO:0003677|GO:0046983
Mibi01g2155 567 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Mibi01g2155 567 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Mibi01g2155 567 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Mibi01g2155 567 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Mibi01g2155 567 Coils Coil 87 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2155 Mibi-ChrMibi01 32166316 32168370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2155 9 161 Type I MADS-box Gene Family AT5G60440 34.118 4.12e-18 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi01g2155 SRF-TF 5.8e-19 No_clan