Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2151 ATGGCCTCAAGCTCAAACAATGCAGGAGGAGGAAGAGGAGGAAGAAAGACCAGGGGCCGCCAAAAGATTGAGATAAAGAAAATGGAAAACGAGAGCAACCTGCAAGTCACCTTCTCGAAGCGCCGTGCCGGCCTCTTCAAAAAAGCCAGTGAGCTTTGCACTCTCTGCGGCGTCGACGTTGCCCTAATCATCTTCTCCCCCGGCGACAAGGTCTTCTCCTTCGGCCATCCAAACCTAGAAGCCGTCCTCGACCGTTTCCTCACCGGAGGCGGCCCGCCGGTACGTCCCTCGGCCTCCGTGCAAATGCTCGAGGTTCACCGGAGCGCCGCCCTCCGCGGCCTCAACGACCAGCTCACCGGCCTCCTTGAAGAGCTCGAAATCGAGAAGAAGCGTGGGGAGGAGCTTGACAAGAAGCTCAAGAACATGGAGAAGGCTTCCTTTTTAGCCCAATCAGTGAATTCTCTCAAAAGGGATGAGCTGTGGATCTACAAGGATCGTTTGGAGGATATGAGGAAGGCTCTTTATCAACAAGCTGATCTGGCTGTTCACCGCTTTATCACTAACCCCTCTCAGTTCTATGTCGCCGGCGGTGGATCCTCCGGCCACGGCTGCGGTGGCGGCGGCCGGATGATGATGATGATGCTGCCGCAACCCCAGCCGCCGCTGGTGCAGAATCTGGCGGCTCCGGCGCCGGCTGCTCCGGTGATTCAGGATCCGATGATGATGTTCGAGGAGAATATGATGTTGATGTCACCTCCGGCGGCGGAGGCCGCTGCTGCGCCGGAAGGGTTCCAGCAGTATGAGAACATGGTGGTGGGAGAGAACAGTGGAGATGGATTTTAG 843 0.5718 MASSSNNAGGGRGGRKTRGRQKIEIKKMENESNLQVTFSKRRAGLFKKASELCTLCGVDVALIIFSPGDKVFSFGHPNLEAVLDRFLTGGGPPVRPSASVQMLEVHRSAALRGLNDQLTGLLEELEIEKKRGEELDKKLKNMEKASFLAQSVNSLKRDELWIYKDRLEDMRKALYQQADLAVHRFITNPSQFYVAGGGSSGHGCGGGGRMMMMMLPQPQPPLVQNLAAPAPAAPVIQDPMMMFEENMMLMSPPAAEAAAAPEGFQQYENMVVGENSGDGF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2151 280 ProSiteProfiles MADS-box domain profile. 18 78 IPR002100 GO:0003677|GO:0046983
Mibi01g2151 280 Gene3D - 30 90 IPR036879 GO:0003677|GO:0046983
Mibi01g2151 280 SUPERFAMILY SRF-like 19 90 IPR036879 GO:0003677|GO:0046983
Mibi01g2151 280 CDD MADS_MEF2_like 21 89 IPR033896 GO:0000977|GO:0045944
Mibi01g2151 280 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
Mibi01g2151 280 FunFam Agamous-like MADS-box protein AGL62 30 95 - -
Mibi01g2151 280 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 74 IPR002100 GO:0003677|GO:0046983
Mibi01g2151 280 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Mibi01g2151 280 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Mibi01g2151 280 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Mibi01g2151 280 Coils Coil 111 145 - -
Mibi01g2151 280 MobiDBLite consensus disorder prediction 1 20 - -
Mibi01g2151 280 PANTHER MADS BOX PROTEIN 20 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2151 Mibi-ChrMibi01 32120453 32121295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2151 15 206 Type I MADS-box Gene Family AT5G60440 47.423 1.98e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi01g2151 SRF-TF 2.1e-25 No_clan