Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2150 ATGGCGTCAAGCTCAAACAATCCAGGAGGAGGAAAGAAGAGCAAGGGCCGCCAAAAGATTGACATAAAGAAAATGGAGAACGAGAACAACCTTCAAGTGACATTCTCAAAGCGCAGAGCAGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGTGGCATTGAAGTTGCCCTTATCGTCTTCTCTCCCGGTGGCAAGGTCTTCTCCTTCGGCCATCCAAACCTAGAAGCCGTCCTCGACCGTTTCCTCACAGGTGGGCCCCCGCCGGCGCCTCCATCGGGCCCCACACAAATGATTGAGGCCCACCGGAGCGCCGCCATCCGGGAGCTCAACGACCAGCTCACTCAACTGTTGGAAGAGCTTGAGATTGAGAAGAAGCGTGGAGAGGAACTTGACATGAAGCTGAAGGACATGGAAAAGGAGTCGTTTTTGGCCCAATCAGTGGATACTCTCAATAGGGATCAGATAGGGATATATAAGGAGCGTTTGGAGGAGATGAAGAAGGATGTTTATCAACAAGCTGATCAGGCTGCCTTTCGCTTTGTTAATGACCCATCTCAGTTTTATGTCGGCGCCGCCGGCGGAGGACTGCCACGTCAGCCGCCGATGATGATGATGATGATGCCGAATATGGCGGCTCCTCCTCATCAGGTGTTGCCTCCTCCCCCTATGATGCAGCAACCTACTCCTCCGCTGATTCAGGATCCTATGATGACGTTTGGAGGGGATATGATGGTGACGTCACCGCAGCCGATGATGATGACGTCAGCGCAGCATCCGCCTCCGCCTGCGCTGCCGCCGCCGCCGCCGCCTGCTGTGCCGGAGGGGTTGCAGCAGTATGGGGACATGGTGGTGGGGAAGAACAGGGGAGGAGGATTTTACTGA 888 0.5484 MASSSNNPGGGKKSKGRQKIDIKKMENENNLQVTFSKRRAGLFKKASELCTLCGIEVALIVFSPGGKVFSFGHPNLEAVLDRFLTGGPPPAPPSGPTQMIEAHRSAAIRELNDQLTQLLEELEIEKKRGEELDMKLKDMEKESFLAQSVDTLNRDQIGIYKERLEEMKKDVYQQADQAAFRFVNDPSQFYVGAAGGGLPRQPPMMMMMMPNMAAPPHQVLPPPPMMQQPTPPLIQDPMMTFGGDMMVTSPQPMMMTSAQHPPPPALPPPPPPAVPEGLQQYGDMVVGKNRGGGFY 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2150 295 MobiDBLite consensus disorder prediction 1 24 - -
Mibi01g2150 295 Gene3D - 96 187 - -
Mibi01g2150 295 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Mibi01g2150 295 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Mibi01g2150 295 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Mibi01g2150 295 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Mibi01g2150 295 FunFam Agamous-like MADS-box protein AGL62 27 92 - -
Mibi01g2150 295 Gene3D - 27 87 IPR036879 GO:0003677|GO:0046983
Mibi01g2150 295 SUPERFAMILY SRF-like 16 85 IPR036879 GO:0003677|GO:0046983
Mibi01g2150 295 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Mibi01g2150 295 Coils Coil 105 142 - -
Mibi01g2150 295 PANTHER MADS BOX PROTEIN 17 173 - -
Mibi01g2150 295 CDD MADS_MEF2_like 16 85 IPR033896 GO:0000977|GO:0045944
Mibi01g2150 295 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2150 Mibi-ChrMibi01 32114079 32114966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2150 12 197 Type I MADS-box Gene Family AT5G60440 50.532 5.32e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi01g2150 SRF-TF 1.4e-25 No_clan