Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2023 ATGGAGATCGATCATGAACTGCCGCCTTCAATCGAGGAAAGCGTAAACGCTGGCGATAACTCCTCTCCTTCTTCATTTTCATCTTCATCCTGCTCCTCTTCCTCCTCGCCGCATGGTTTGAAGGATAAGGTGAGCGAAGGGAACGCGTCCACGTCGGCCAAGTACGATGATGATGACGAGGAGGAAGAGGACGTCTGTCGGATTTGCCGGAACCCTGGTGATGCTGAAAATCCTCTCAGGTATCCGTGTGCGTGTAGCGGGAGTATCAAGTTTGTGCATCAGGATTGTCTCCTTCAGTGGCTTAATCATAGCAACGCTCGTCAATGTGAGGTTTGCAAGCATGCCTTTTCATTCTCTCCTGTTTATGCTGCGAATGCTCCAGCTAGGCTACCTTTTCAAGAATTCGTTGTTGGAATGGCTATGAAAGCGTGCCATGTTCTGCAATTCTTTTTGCGCCTGAGTTTTGTGCTATCTGTGTGGCTCCTTATTATACCATTCATCACATTTTGGATATGGCGATTAGCTTTTGTGAGGAGCTTTGCTGAAGCCCAGAGGTTATTCTTGAGTCATTTATCTACAGCCGTTATTCTGACAGATTGTCTACATGGTTTCCTACTCTCTGCAAGTATTGTGTTCATTTTTCTTGGGGTCACTTCTTTGAGGGATTACTTTAGGCATTTGCGAGAAATTGGGGGGCAGGATGTTGACAGAGAAGATGAAGTGAATGGGGCTCGAATTGCCAGAAGGCCTGCTGGACAAGCTAATCGTAACGTTGCTGGTGATGGAAATCTTGAGGATGCTGGAGTTCAAGGCATTGTTGGAGCAGCTCAAGCTCCTAGAAGGAATGCAGATAATGTTGCAGCACGGTGGGAGATGCAAGCACAACGTCTTGAGGCACATGTGGAGCAAATGTTTGATGGTCTGGATGATGCTGATGGTGCTGAGGATGTGCCCTTTGATGAACTTGTGGGCATGCAGGGTCCAGTTTTCCATCTGGTTGAAAATGCCTTTACTGTGCTGGCAAGCAATATGATTTTCCTTGGTGCTGTGATCTTTGTGCCCTTTTCATTGGGCCGCGTTGTACTCCATTATCTATCTTGGTTCTTTTCAACTGCTAGTGGTCCTGTATTATCAACTGTCATCCCACTTACAGACACAGCTCTCTCCCTAGCAAATATCACATTAAAAAATGCGTTAACTGCAGTAAAAAATTTGTCATCTGAACCTCAAGAGAGTGGACTGATAGGCCAGGTTGCAGAAATGTTGAAGGTTGATGCAAGTGGACTAAGTGAAATGTCTAAAAACATTAGTGACAGTGTTTCAGCTGATCTCTTGAAAGGAGGGTCAGTTGGAACTTCAAGGCTTTCTGATGTCACCACTCTGGCCATTGGATATATTTTCATTCTCTCTCTACTCTTTTGCTACTTTGGTGTTGTTGCTTTGATTCGATACACAAGGGGTGAGCCTTTAATCATGGGAAGGTTCTACGGTATTGTTTCTGCAGCAGAGACAATTCCATCTCTATTCAGGCAGTTTTTGGCAGCAATGAAGCATTTGATGACCATGGTTAAGGTTGCTTTCCTTCTAGTTATTGAATTGGGGGTATTTCCCTTGATGTGTGGATGGTGGTTAGATGTTTGTACCATCAGGATGTTTGGGAAGACAATGGCTCACAGAGTTCAATTTTTTTCTGCTTCTCCTCTAGCAAGTTCATTGGTTCATTGGGTTGTAGGGATTGTCTACATGCTACAAATCAGCATATTTGTCAGCCTTCTTAGAGGGGTTTTGCGCAATGGAGTCCTGTACTTCCTTCGAGATCCTGCTGATCCCAACTACAACCCTTTTCGTGATTTAATTGATGACCCTGTTCACAAACATGCTCGTAGGGTCCTGTTATCTGTTGCAGTTTACGGAAGTTTAATTGTGATGCTTGTATTTTTACCTGTTAAACTTGCCATGCGGATGGCTCCTTCCATTTTCCCACTTGACATATCGGTATCTGATCCATTCACTGAAATTCCAGCCGACATGCTTCTCTTCCAGATTTGTATCCCATTTGCTATTGAGCATTTTAAACTGAGGACAACTATTAAGTCCCTTCTGCGCTACTGGTTTACAGCAGTTGGTTGGGCACTTGGTTTAACTGATTTCTTACTTCCTAGACCTGATGATAATGGTGCTCAAGAAAATATGAATGGGGAGCCAGCTAGGCAGGACAGGCTACAGGTTGTACAAGGAGGGGTACCGGACCGGGGAATGGTGGCCTTTGCTGGCAATGAAGTGAACAGGGGCCTTGTTGGATCCGGAGACCTGAATGTTGGAGATGACTTTGAAATTGATGAACAATCTGATTCTGACTATGGTTTTGTGCTTCGCATTGTACTGTTGCTGGTGGTTGCTTGGATGACTTTACTTGTGTTCAATTCTGCCCTGATAGTTGTACCAATTTCACTTGGGCGGGCACTTTTCAATGCCATACCTCTTCTCCCTATCACTCATGGCATTAAATGCAATGATTTATATGCTTTCATCATGGGAAGCTATGTCATATGGACGGCTGTTGCTGGAGCTAGATACTCCGTCGAACAAATAAAAAAGAGGAGGGTTTCAATTTTATTTGGCCAAATTTCCAAGTGGTGTGCGATTGTTATAAAGAGTTCTGCTCTTTTGTCTATATGGATATTCGTCATTCCAGTGCTAATTGGACTCCTCTTTGAACTTTTGGTTATTGTACCAATGAGAGTTCCGGTGGATGAAAGTCCAGTGTTCCTCCTCTATCAAGACTGGGCTTTAGGGCTTATTTTCCTCAAAATATGGACTAGATTGGTTATGTTGGACCACATGATGCCGCTCATGGATGACAGCTGGCGTGTGAAATTTGAGAGGGTGAGGGAGGATGGTTTCTCGAGGTTGCAAGGACTATGGGTGTTAAGGGAGATTGTGCTTCCGATCATAATGAAACTGTTGACAGCATTGTGTGTGCCATATGTGTTGGCCAGAGGAGTGTTTCCAGTGTTGGGGTACCCATTGGTGGTCAATTCTGCTGTATATCGGTTTGCCTGGTTGGGATGCCTCTCTGTCAGCCTCTTATGCTTCTGTGCCAAGCGATTCCATGTCTGGTTCACAAACCTCCACAATTCCATTCGTGATGATCGTTATTTGATCGGTCGTCGGCTGCATAACTTTGGGGAAGAAGTTAGCAGGGCTAATGAAGATGCAGATTCTACGGTAACAGAGACTACTGATTCGCTCAGCACTGATTTGATACCACATGACCGTGAAGTAGATGTTGGATTGCGTCTGCGGCATGTGAATCGACAGGTTGCCTGA 3330 0.4474 MEIDHELPPSIEESVNAGDNSSPSSFSSSSCSSSSSPHGLKDKVSEGNASTSAKYDDDDEEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAANAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFAEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGVTSLRDYFRHLREIGGQDVDREDEVNGARIARRPAGQANRNVAGDGNLEDAGVQGIVGAAQAPRRNADNVAARWEMQAQRLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGAVIFVPFSLGRVVLHYLSWFFSTASGPVLSTVIPLTDTALSLANITLKNALTAVKNLSSEPQESGLIGQVAEMLKVDASGLSEMSKNISDSVSADLLKGGSVGTSRLSDVTTLAIGYIFILSLLFCYFGVVALIRYTRGEPLIMGRFYGIVSAAETIPSLFRQFLAAMKHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKTMAHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPDDNGAQENMNGEPARQDRLQVVQGGVPDRGMVAFAGNEVNRGLVGSGDLNVGDDFEIDEQSDSDYGFVLRIVLLLVVAWMTLLVFNSALIVVPISLGRALFNAIPLLPITHGIKCNDLYAFIMGSYVIWTAVAGARYSVEQIKKRRVSILFGQISKWCAIVIKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLMDDSWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLARGVFPVLGYPLVVNSAVYRFAWLGCLSVSLLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEEVSRANEDADSTVTETTDSLSTDLIPHDREVDVGLRLRHVNRQVA 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2023 1109 CDD RING_CH-C4HC3_MARCH6 65 114 - -
Mibi01g2023 1109 Pfam RING-variant domain 66 112 IPR011016 GO:0008270
Mibi01g2023 1109 SUPERFAMILY RING/U-box 60 116 - -
Mibi01g2023 1109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 124 IPR013083 -
Mibi01g2023 1109 PANTHER SSM4 PROTEIN 51 1065 - -
Mibi01g2023 1109 MobiDBLite consensus disorder prediction 14 51 - -
Mibi01g2023 1109 ProSiteProfiles Zinc finger RING-CH-type profile. 58 119 IPR011016 GO:0008270
Mibi01g2023 1109 FunFam Probable E3 ubiquitin ligase SUD1 51 124 - -
Mibi01g2023 1109 ProSiteProfiles Zinc finger RING-type profile. 66 113 IPR001841 -
Mibi01g2023 1109 SMART ringv_2 65 113 IPR011016 GO:0008270
Mibi01g2023 1109 MobiDBLite consensus disorder prediction 1 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2023 Mibi-ChrMibi01 29571046 29576971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2023 14 133 C3H Transcription Factor Family AT1G50440 30.597 8.62e-07 49.7