Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi01g2014 | ATGCAAGGTAACAGAAGGACTCTTGGGTCCTTCCCAGCAATTGTAAGTATGCTGCAGGAGCCTAGTTCTAGTGGCACTGACATAAATCAGCAGACCTCTTTGAATCACATGCAAAATCCAGTTGATGCTCGGTTGTCAGATTTTCTGGGACCCTCCGGTGAGACTGCATGTTTACGCACTAGTGGTCCTAATGTTCAGAACTTTGATGGATGGAATGCTGGTGAACCCAGTTCTAGTGTACATCTTCACAGTCGAGTCAATAATGACGGGCTAAAAGCAGAACATGGTTGGTCTTCTTCATGTGGTGCCTCCACTGAGGATGTATTCAGGCCAGAGGAACGGCAATTTGATCCAAATAATGTAACTTTCCCTGGTAGCTTGAATACCGACTTACATGGAAATCAATCCAGAGTCCGGCCTTTCTTCTTGCATGGTTCTAGCTCCAATCATAGAACCCAGAATGCGACTTTAAATACGGGTTCCGTTGCCAGCCCTCCTAATCATGGGAAAGGAACAGAACCTTGTAGCAGTGATAGTATTCACAATACATGTGGGTTTAATAGTAAGCATGCATCATTTGGTAGTGCCTCATTTGATCATGTAGGAACTTCATCTGGAAGCTCTGGTTATATTGGGGGAGATGATGATAATCCAAGCTCTTTAGTTAATTGGGGTTCTTCCTGCAAGAGAAAGGCTCTTGAAAGTACTTCTGGGCAGCTGTCTACTGGGGAAAGTTCAAGCTCTTTTCTAGAAGCTGAAAGCAGTAGTTGGCCTACTGGGACTCCCAATTCTAATATTTCTTCCGGCAGTTTAAATGTGTCTAGACCTTCTGAGGATTTTCCTATTACTAATCCTCCAGTGGTGCTGAACCCAAGAAATGAGATGAGGCAAATAGCTTCCGATGCATTCCCTTTGGTTGGAGTTAGGGGAAATGCGAACAGGCCTCTGACTCTGAGAGACTTTGATAGGAGGATGAATTATCCACAACGACAGGAATCTAGGCATGCTAATCATTCTTCTTCCCGCCAAACACCTGCACCTACCTCTCACCCGTTTAATGATTCTCTAGAATTAAGGTTAACAGCTGGAGTTTCAGCAACCAGTTCTAGTGCCCCTCAGTGTCAATCACATGTTACTCACATCCCTGGTTTGCCAGGGAACACACATCCTTTTCCTTGGAATGGAGCTTCTAGTTCAAGAGGAGCCAGTTCATCAACTTCATATAACTCTGCTGAAAGAGAACTTCGGGAAGAATTGAACTTAAGGATTTTTCCAAGAGACAATACAGAGCACCCCATCCTTGCACCCTCATCATCTGGACTTGACCCTACAGGTTGGCATATGTCATCTGGCAATATGAACAATTCTGGAAGTGCACCTCCTACATCTTGGATTGGATCCAGTTCAAATGTCAATCCATTACCTAGTCCGGGCTGGATTGTTCCCCATGAAGTTCCAACTCAGAGCCAGCAAAGATTACCAGAGTTCAGTCCCTGGTCCTTTTTTCCATCAATGAACTCAGTGTCTGGTGTTCATAATGTTCATTCTGCCTCATCTTCTACTTCTTCTGGTCCTCCTCCCTTTACTCCAGACATTAGCAACCACCAATCATTTTCAAGATTAGCGTCATTAATGGAGAGAAGAGGTGATGAAGTTCTTAGTGCACCCCACTCATTACGGGCTTTGGCTGTTGACATTGAGGGGAGACGCCGATTGATATCTGAGATTCGCCAAGTCTTAAGTGCAATGCGTAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCATATATCATGGTATGGCTGAACTGCATGATAGGCACAGGGACATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCGCATTGGAGATGTGAGCACTGGATTGAGTGAGGATACCATCATGAGGTTGATGAAACATCGGATCTTCGTGTCTTTCATGACCGAGGCTTCTACATATCTGGAACCTTGTTGTATTTGTCAGGAGCAATATGCTGATGGGGAGGATGTGGCCTCACTGGATTGTGGACATGAATTCCACACCAACTGCATCAAGCAGTGGCTAATGCAGAAGAACCTGTGCCCCATTTGCAAAACAACAGCCCTATCAACATGA | 2151 | 0.4491 | MQGNRRTLGSFPAIVSMLQEPSSSGTDINQQTSLNHMQNPVDARLSDFLGPSGETACLRTSGPNVQNFDGWNAGEPSSSVHLHSRVNNDGLKAEHGWSSSCGASTEDVFRPEERQFDPNNVTFPGSLNTDLHGNQSRVRPFFLHGSSSNHRTQNATLNTGSVASPPNHGKGTEPCSSDSIHNTCGFNSKHASFGSASFDHVGTSSGSSGYIGGDDDNPSSLVNWGSSCKRKALESTSGQLSTGESSSSFLEAESSSWPTGTPNSNISSGSLNVSRPSEDFPITNPPVVLNPRNEMRQIASDAFPLVGVRGNANRPLTLRDFDRRMNYPQRQESRHANHSSSRQTPAPTSHPFNDSLELRLTAGVSATSSSAPQCQSHVTHIPGLPGNTHPFPWNGASSSRGASSSTSYNSAERELREELNLRIFPRDNTEHPILAPSSSGLDPTGWHMSSGNMNNSGSAPPTSWIGSSSNVNPLPSPGWIVPHEVPTQSQQRLPEFSPWSFFPSMNSVSGVHNVHSASSSTSSGPPPFTPDISNHQSFSRLASLMERRGDEVLSAPHSLRALAVDIEGRRRLISEIRQVLSAMRRGENLRAEDYMLFDPFIYHGMAELHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEDTIMRLMKHRIFVSFMTEASTYLEPCCICQEQYADGEDVASLDCGHEFHTNCIKQWLMQKNLCPICKTTALST | 716 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi01g2014 | 716 | SMART | ring_2 | 669 | 709 | IPR001841 | - | |
| Mibi01g2014 | 716 | SUPERFAMILY | RING/U-box | 668 | 713 | - | - | |
| Mibi01g2014 | 716 | MobiDBLite | consensus disorder prediction | 329 | 354 | - | - | |
| Mibi01g2014 | 716 | MobiDBLite | consensus disorder prediction | 338 | 354 | - | - | |
| Mibi01g2014 | 716 | FunFam | E3 ubiquitin-protein ligase MBR2 | 636 | 714 | - | - | |
| Mibi01g2014 | 716 | Pfam | Ring finger domain | 669 | 710 | IPR001841 | - | |
| Mibi01g2014 | 716 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 632 | 714 | IPR013083 | - | |
| Mibi01g2014 | 716 | MobiDBLite | consensus disorder prediction | 366 | 382 | - | - | |
| Mibi01g2014 | 716 | MobiDBLite | consensus disorder prediction | 391 | 410 | - | - | |
| Mibi01g2014 | 716 | ProSiteProfiles | Zinc finger RING-type profile. | 669 | 710 | IPR001841 | - | |
| Mibi01g2014 | 716 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 224 | 715 | IPR045191 | GO:0061630 | |
| Mibi01g2014 | 716 | MobiDBLite | consensus disorder prediction | 235 | 283 | - | - | |
| Mibi01g2014 | 716 | MobiDBLite | consensus disorder prediction | 366 | 413 | - | - | |
| Mibi01g2014 | 716 | CDD | RING-H2_TTC3 | 668 | 710 | - | - | |
| Mibi01g2014 | 716 | MobiDBLite | consensus disorder prediction | 235 | 279 | - | - | |
| Mibi01g2014 | 716 | MobiDBLite | consensus disorder prediction | 430 | 469 | - | - | |
| Mibi01g2014 | 716 | MobiDBLite | consensus disorder prediction | 140 | 177 | - | - | |
| Mibi01g2014 | 716 | MobiDBLite | consensus disorder prediction | 442 | 469 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi01g2014 | Mibi-ChrMibi01 | 29439968 | 29443906 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi01g2014 | 18 | 716 | C3H Transcription Factor Family | AT2G15530 | 37.077 | 5.06e-114 | 358 |