Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2008 ATGTCAGTGAATAAAGATTCAGAGCCGTTGGATTCAGTAGTTCAGGTTCCACACCACTTCAGATGCCCCATTTCCCTCGAGCTCATGACCGAACCCGTAACCATATCCACGGGTCAGACCTACGACCGAGCCAGCATCGAGTCATGGCTCGCCGCAGGCAAGGCCACGTGTCCGGTCACCCGAACACCTCTCTCCGACTTCACCCTCACCCCTAACCACACCCTCCGCCGCCTCATCCAACACTGGTCCGCCTCCAATCTCAACTTCGGATACCACCGGATCCCAAGCCCGACCCGACCCGTTAACCCGACAACAATTCGGACCCTCTTGAATCAGGCCTCGTCTGAAACAGCCACTCCTGAATCGCGCCTCTCTGCTCTGCGTCGACTCAGAGGAATCGCCAATGACTCAGACACGAATCGTTCTCTCATTGAATCTTCTTACAACTTCCGCAAGATTTTACTTCATATCCTCTTTGATTCCACCGATTCTGAATGTTTAGAGTTGAAGCACGAATCGCTAGGGCTTTTGATTTGCTTCTCACTTTCCGAATCTGAGTGCGTATCGATCTCATCGAAACCAGAGAGAATCAATTACTTGTCGCGCTTGTTATTTCACTCCTCCATCGAAGTCCGAGTCAACTCGGCCGCACTGATCGAGTCCGTACTGAGCGGGACTCGTTCGACTGAGATTCGCCAAAGAATCAGCAATGTCTGTGAGATCTACGAAGGGATTGTTGATATCTTGAAGAGCAGTCATGTTTCTTACCCTCGCGCCTTGAAGGTTGGGGTTAAGGCCTTGTTTGGTTTGTGCCTGCTGAAACAAACGCGGCACAAGGCGGTGGCCGCCGGATCGGCGGAGGTTTTAATCGATCGGCTTGGCGATCTCGAGAAGTGTGATTGTGAGAGGGCTTTGGTGGCGGTTGAGTTGCTGTGTAGAGTTCCGGCTGGGCTGGCGGCGCTTGTAGGGCACGCGCTGACGGTGCCGCAGCTGGTGAAGGCGATTCTGAGGGTGTCGGACCGGGCGACGGAGCACGCCGTCGGGGCGTTGTTTGCGGTTTGTTCGGAGTCGGAGGAGTGCCGGAGGGAGGCGGTGGCGGCGCGTGTGTTGACGCCGCTGTTGTTGGTGGTGCAGAGTGATTGTACGGAGAGGGCGAAGAGGAAGGCAAAGATGTTGTTGAAGCTTCTTAGGGATTCTTGGCCCCATGATTGTAGTGTAAATTCTGATGATTTTGCATGCAGTGAGCTTGTGGCACCGTTTTGA 1263 0.5408 MSVNKDSEPLDSVVQVPHHFRCPISLELMTEPVTISTGQTYDRASIESWLAAGKATCPVTRTPLSDFTLTPNHTLRRLIQHWSASNLNFGYHRIPSPTRPVNPTTIRTLLNQASSETATPESRLSALRRLRGIANDSDTNRSLIESSYNFRKILLHILFDSTDSECLELKHESLGLLICFSLSESECVSISSKPERINYLSRLLFHSSIEVRVNSAALIESVLSGTRSTEIRQRISNVCEIYEGIVDILKSSHVSYPRALKVGVKALFGLCLLKQTRHKAVAAGSAEVLIDRLGDLEKCDCERALVAVELLCRVPAGLAALVGHALTVPQLVKAILRVSDRATEHAVGALFAVCSESEECRREAVAARVLTPLLLVVQSDCTERAKRKAKMLLKLLRDSWPHDCSVNSDDFACSELVAPF 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2008 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 90 IPR013083 -
Mibi01g2008 420 FunFam RING-type E3 ubiquitin transferase 16 88 - -
Mibi01g2008 420 ProSiteProfiles U-box domain profile. 15 89 IPR003613 GO:0004842|GO:0016567
Mibi01g2008 420 SUPERFAMILY RING/U-box 11 86 - -
Mibi01g2008 420 CDD RING-Ubox_PUB 20 61 IPR045210 -
Mibi01g2008 420 SUPERFAMILY ARM repeat 105 397 IPR016024 -
Mibi01g2008 420 SMART Ubox_2 19 82 IPR003613 GO:0004842|GO:0016567
Mibi01g2008 420 Gene3D - 96 403 IPR011989 -
Mibi01g2008 420 PANTHER WDSAM1 PROTEIN 14 402 IPR045185 GO:0061630
Mibi01g2008 420 Pfam U-box domain 16 86 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2008 Mibi-ChrMibi01 29360148 29361410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2008 8 420 U-box Gene Family AT1G49780 59.666 1.95e-165 469