Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g2005 ATGTTCAATCTCAAGAAAGATTTTGGAGGTTGTTTGCAAAAAGAGAGAGAGAGAGAGATTTTGGAGGTTGGTCGATTGTCCCTCTTTCGTTTCAGGATCTTGATTCTTCAGCTTCTTCTGAAGGATTTATGTCTGCCTTGGCGTGATTCCCACAGGAACTTTCCAGATGATATGATGGAGACCCCAAATAGATCTACATCAACAGGGTCTTCAGACTCATCAGAGCAGAAGGAGAAGGATATAACTGGTTCAAATCCAAATGCTAACCAGCCCCCATGTCCTTTGAACCAGCAACCTTCTTGTTCCTTGGATGGCCCAGTGGCTATACTTTGGGATATTGAAAATTGTCCTGCTCCAAGCGATGTGCGTCCTGAAGATGTTGCCGGGAATGTGACAATGACTTTGCGAGTGCATCCATTAATTAAAGGAGCTGTTGTGATGTTTTCTGCTTATGGGGATTTCAATAATTTCCCCAGGCGACTCAGAGAAGGTTGCCAAAGAACTGGTGTTAAACTTACTGATGTTCCCAGTGGGAGAAAAAATGCTGCTGACAAAGCTATCTTGATTGACATGTTCTTGTTTGCCCTTGACAACCGACCGCCTTCTTCTATAATGCTGATATCTGGAGATGTTGATTTTGCTCCTGCACTCCATGTTCTTGGCCAACGGGGATATACTATCATTGTTGTTGTCCCTACTAGGGTCGGTATGTCAACTGCCCTTAGCAATGCTGGTAAATTTGTCTGGGACTGGCCTAGCATTGCTCGTGGAGAAGGTTTTGTGCATTCCTCGAAGGCTCTAGTGCCACCTCATGTTCCAAATGAGGTTGTTGCAGATCTGATAGGGTGCCATATCAATGGCAACTTTGATGGACAAAACGAAGAAGCTATTGTATATGGAGGGATCTCACAGAACTGCCATAACTCATTTGTGTCCCAATCTCTGTCTGAATACAGAAGCGATACATTGAATGCTTCATGCTTTCCAATGGCTTTGAGGTCACATAGCCTTCCATCCACTCTGAACAATGTTCCAGGAGGACCTATGGCTTCTTCTAGTGACCAAAATGAATCCCCATCATGGGTACCAGCTGGGGATTTGAATGGTGTGAAATGCCAGCTAGTCAAGTTGCTTGAACTTTCTGGAGGTTGTTTGCCTCTGGCTCAAGTTCAACCGGAGTATCAGAAATATTTTGGGACGTCTCTCTCTCCATCTAAATATGGGGTACGCAAAGTAATGAATCTTTTCAAGAAAATGGGTGATCCATTTTCTGTGGAAGGAAAAGGTCCTCGGGTAGTTGTATATCTCCGAAACTGGAAGATGTGCCCTTTGTCTCGGGCAAGTGAAGATAAGAAAGAAAAAGGGATTCAGGAAGAGAATGCAGATATTGTCCATGCTGGTTGCTCTGTAGATGGAGTAAGATTACTCACGGAAGGACATGATGAGAGAAACAGCACAGAAAAGGTTCACCATAGGAAAGCAGCCAGAAGTGAAATTCATGACCAAATTCTTGAGCAATTCAGGCATGAGCTGCAAGAAATTCTTGTAATTTATTCTTGGCCAATATTCATAGATTGTTTTGATGACATTTACCGGCTACGATACAAAAAGCCACTGGAATACCAGAAACTGGGCGTGGACAAATTAGAGGAATTATTTGAGAAAGTGAGTGATGTGGTGGCACTGCATGAAGAACCAGTAAGCAAGAGGAAGTTTCTGGCTGCTGTGGATGGTTAG 1737 0.4358 MFNLKKDFGGCLQKEREREILEVGRLSLFRFRILILQLLLKDLCLPWRDSHRNFPDDMMETPNRSTSTGSSDSSEQKEKDITGSNPNANQPPCPLNQQPSCSLDGPVAILWDIENCPAPSDVRPEDVAGNVTMTLRVHPLIKGAVVMFSAYGDFNNFPRRLREGCQRTGVKLTDVPSGRKNAADKAILIDMFLFALDNRPPSSIMLISGDVDFAPALHVLGQRGYTIIVVVPTRVGMSTALSNAGKFVWDWPSIARGEGFVHSSKALVPPHVPNEVVADLIGCHINGNFDGQNEEAIVYGGISQNCHNSFVSQSLSEYRSDTLNASCFPMALRSHSLPSTLNNVPGGPMASSSDQNESPSWVPAGDLNGVKCQLVKLLELSGGCLPLAQVQPEYQKYFGTSLSPSKYGVRKVMNLFKKMGDPFSVEGKGPRVVVYLRNWKMCPLSRASEDKKEKGIQEENADIVHAGCSVDGVRLLTEGHDERNSTEKVHHRKAARSEIHDQILEQFRHELQEILVIYSWPIFIDCFDDIYRLRYKKPLEYQKLGVDKLEELFEKVSDVVALHEEPVSKRKFLAAVDG 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g2005 578 Pfam NYN domain 106 245 IPR021139 GO:0004540
Mibi01g2005 578 CDD LOTUS 504 566 - -
Mibi01g2005 578 ProSiteProfiles OST-type HTH domain profile. 503 577 IPR025605 -
Mibi01g2005 578 ProSiteProfiles OST-type HTH domain profile. 366 438 IPR025605 -
Mibi01g2005 578 Pfam OST-HTH/LOTUS domain 504 566 IPR025605 -
Mibi01g2005 578 Pfam OST-HTH/LOTUS domain 368 431 IPR025605 -
Mibi01g2005 578 CDD PIN_limkain_b1_N_like 106 232 - -
Mibi01g2005 578 PANTHER LIMKAIN B LKAP 74 333 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mibi01g2005 578 Gene3D - 498 570 IPR041966 -
Mibi01g2005 578 Gene3D - 366 435 IPR041966 -
Mibi01g2005 578 MobiDBLite consensus disorder prediction 341 360 - -
Mibi01g2005 578 MobiDBLite consensus disorder prediction 80 97 - -
Mibi01g2005 578 Gene3D - 104 252 - -
Mibi01g2005 578 CDD LOTUS 367 436 - -
Mibi01g2005 578 MobiDBLite consensus disorder prediction 54 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g2005 Mibi-ChrMibi01 29300972 29304459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g2005 103 257 C2H2 Transcription Factor Family AT5G61190 40.000 3.69e-27 115