Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1977 ATGATCATTCTCATCATGATGATGATTCTACCACCTTCTCCTTCTCCTTCTCCCTCTCCCTCTCCCTCTCCCTCTCAGCCACCCCATCATCCCCACTTCCACCATTTCCCCCCATCTCCTTCTCCGGCACCGGCCACTTTTCCGGTACCATTCAACAAACCACCCCCACAGCCGTCAAAGCTCTCCGTTGACTTCAGTCCACCCCTCATAGCAATGGTGGTGGTCGTCGCCGCCGCCTTCCTCATCGTCACATATTCCCGCCTAATCTCCCGCCACCTCATCCCCCCTATCCTCCGCCTCACCCGGCGGTGGCGCCGTCGCCGGCGACGCCCCTCCTCCGCCGGCGACCTCGACTCACTCCCTTACTACGACTCCCCCTTCGACCCAATAGATGGGCCCCACATGATGTTCTCCTCCCCTTACGGCCTCGACGAATCCATCATCAAAACCATCCCATTCTCCCTCTACACCGCCGCCGCCAAATCCAAAGACCAATTCTCAGAATCACGACGCAGCGACTGCGCCGTTTGCCTCCTCGAATTCGAAGACGACGACTACGTCAGAACGCTGCCGTTCTGTTCCCACACCTTCCACGTCGACTGCATCGACGCCTGGCTTCGTTCCCACGCAAATTGCCCCCTCTGCCGCGCCGGAGTACTCTGTACGGACTCCCCGTTGTTCACTCCGATGATGGCCGCCAGGATTCGCCCCAGCCTCGACGACGACACCATCCTCCATCGAATCAGTATGGACCCTCTCGTCGAAGCTCCGTCTCCGTCACCGTCTCCGTCGCCGTCGCCGGCGGGGAATTCCCTGGTGCCGGAGATTACTCCTTGTAGCGAAGATCAGGGGAATACGGAGGAGGGTAGGTTTAACGGTGGGCGTGATTTCCTGCTGAAGCGGTCGTATTCGTTTGGGTTTGAGCGGAGCTTGGCGTCGGAGAGAATGGTGATGGAGGCGGCTACGGCGTCGCCGTGGAGGTATCATAGGAGGGGAAGTAGTAGCAGCTTTTTCTGGAGTAAAAGGCCGTCGCCGTTTGGGTCGTTGGGGAAATCGAGGGTGTTCTCGTTCAGGATGAAATCGCCGTTTTTCCGGCGGAGGGGGTTTTTTCCTCTGTCGGAATCGAGTATGAGGTCGTACGTTGGAGGAGGGAGCTCGTCGAGGAGGAGTAAGTCGATAGCGAGTCCCATGTTTCTGAGGTCGTCGGCGGCGATGGCGGCGGCCGGAGCGGCGGCGTTCTCGTCGAGCCGCCTGAGGTGCGGTGATCCAGAGGCGTTGTTGTCGCCGGAGAGATATAGTAGGAGGTGA 1308 0.5933 MIILIMMMILPPSPSPSPSPSPSPSQPPHHPHFHHFPPSPSPAPATFPVPFNKPPPQPSKLSVDFSPPLIAMVVVVAAAFLIVTYSRLISRHLIPPILRLTRRWRRRRRRPSSAGDLDSLPYYDSPFDPIDGPHMMFSSPYGLDESIIKTIPFSLYTAAAKSKDQFSESRRSDCAVCLLEFEDDDYVRTLPFCSHTFHVDCIDAWLRSHANCPLCRAGVLCTDSPLFTPMMAARIRPSLDDDTILHRISMDPLVEAPSPSPSPSPSPAGNSLVPEITPCSEDQGNTEEGRFNGGRDFLLKRSYSFGFERSLASERMVMEAATASPWRYHRRGSSSSFFWSKRPSPFGSLGKSRVFSFRMKSPFFRRRGFFPLSESSMRSYVGGGSSSRRSKSIASPMFLRSSAAMAAAGAAAFSSSRLRCGDPEALLSPERYSRR 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1977 435 SMART ring_2 174 215 IPR001841 -
Mibi01g1977 435 Pfam Ring finger domain 173 216 IPR001841 -
Mibi01g1977 435 CDD RING-H2_PA-TM-RING 173 216 - -
Mibi01g1977 435 MobiDBLite consensus disorder prediction 269 287 - -
Mibi01g1977 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 220 IPR013083 -
Mibi01g1977 435 ProSiteProfiles Zinc finger RING-type profile. 174 216 IPR001841 -
Mibi01g1977 435 MobiDBLite consensus disorder prediction 13 37 - -
Mibi01g1977 435 MobiDBLite consensus disorder prediction 253 291 - -
Mibi01g1977 435 FunFam RING-H2 finger protein ATL65 136 220 - -
Mibi01g1977 435 SUPERFAMILY RING/U-box 173 221 - -
Mibi01g1977 435 PANTHER RING-H2 FINGER PROTEIN ATL16 48 232 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1977 Mibi-ChrMibi01 29011436 29012743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1977 63 435 C3H Transcription Factor Family AT3G18930 49.876 1.29e-90 279