LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi01g1960	ATGGAAGGGGTAACTTACAATTCTTTTGTGCTTGTGGTTGATTCAAACAAGTTTGGTTCTTTATATTTGCAGAGAGTTCCTAGAACGTTTGTGAATCACCACGGGGATGATTTCTCAACCAATGTTACTTTACATGATCCTAATGCACGAGAATGGAGAATTGGTTTGGAGAAAAGAGAAGATGACCTTTTCTTCTCAGAAGGTTGGGACAAGTTTGTGGAATACTATTCCATCACCGGTGAATGCTTTGTGGTTTTCAGATATGAAGGAGATTCAAGATTCCATGTTCTAATATTCGACATGAGTGGATCAGAAATTCTGTATCCTCCCCACAAGCCAACAAGTCCTGAAAGAAATCAGGTTGCCTCATCAGATTCATCAAAGAGCAATGACCATGTTCATCATTCAAGTCAAAATCATGATGATAATGATAATGTTAATGATGGAGGTGGTGGTGAGAGGAACAAGGTTGCCTCATCAAGATCATCAAAGAGCAACGACCATGATCATGGTGGTGGTGATGGTATTGGCGATCACTTTAGTGAAGAATATTTTCCTGATGATGAGGATGATTCTCCTGATGCATATAAAGAAGATGATTTCTACTATAGTATTTCTTTGTCTAAATCTACCTCTACCCCTCCATGTAAATCCACTTCTCCAACAAAAAAACGAGGCTTCACCAAATTCAGAGATCAGTCATCAAGAAGAGAAAGAAGGAATCGATATTCCCGTTCCCCTTCCCCTTCTCCTTCTCCTTCTCCAAAAAGAAATAGGTATGAACATAGTAGTGGTAGTGAAAGTGATGAACGAAGTGATGGAGGATCAAATAATAGAAGAAAAAGAAGAGGGTCCCCAGAAGGAAGAGTTAGAGGCGGGAGAGAAAAGAAGGAAAACCACGTGGAATGGATTCGTAAGAAAACATTGAAATCAAAAACATACAAAAAGAGGCACATATCAGATAGAGCAAGAGAAAAGGTTATCCAAGCTGCTGACAACTACAAATCTGACTTTCCTTCTTTCAGGGCTGTCTTGAGACCTCACAACTTATACAACAGTATTGCATATGTGCCAGCACGTTTTGCAGTGAAGTATATGAGGGGAGGGTCAGAGAAAATAAGACTGGAGAACGTGAAGGGAAAGCAATGGGAAGCTCGATGCTTATGCAAGAGTGGGTCAGGTAATGGAATGAGCATAGGAGAAGGGTGGGCTAAGTTTAGGATGGACAATGAGGTTAAGGAAGGAGATGTGTGTGTATTTGAGCTCGTTAAGAGGAGGGACATTGTATTGAGAGTTCAAATATTTCGTGTCCGACAATATGCAGACCGATGA	1332	0.4047	MEGVTYNSFVLVVDSNKFGSLYLQRVPRTFVNHHGDDFSTNVTLHDPNAREWRIGLEKREDDLFFSEGWDKFVEYYSITGECFVVFRYEGDSRFHVLIFDMSGSEILYPPHKPTSPERNQVASSDSSKSNDHVHHSSQNHDDNDNVNDGGGGERNKVASSRSSKSNDHDHGGGDGIGDHFSEEYFPDDEDDSPDAYKEDDFYYSISLSKSTSTPPCKSTSPTKKRGFTKFRDQSSRRERRNRYSRSPSPSPSPSPKRNRYEHSSGSESDERSDGGSNNRRKRRGSPEGRVRGGREKKENHVEWIRKKTLKSKTYKKRHISDRAREKVIQAADNYKSDFPSFRAVLRPHNLYNSIAYVPARFAVKYMRGGSEKIRLENVKGKQWEARCLCKSGSGNGMSIGEGWAKFRMDNEVKEGDVCVFELVKRRDIVLRVQIFRVRQYADR	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi01g1960	443	CDD	B3_DNA	339	436	IPR003340	GO:0003677
	Mibi01g1960	443	MobiDBLite	consensus disorder prediction	225	244	-	-
	Mibi01g1960	443	Gene3D	-	319	441	IPR015300	-
	Mibi01g1960	443	ProSiteProfiles	B3 DNA-binding domain profile.	340	438	IPR003340	GO:0003677
	Mibi01g1960	443	MobiDBLite	consensus disorder prediction	204	223	-	-
	Mibi01g1960	443	MobiDBLite	consensus disorder prediction	128	149	-	-
	Mibi01g1960	443	Pfam	B3 DNA binding domain	345	437	IPR003340	GO:0003677
	Mibi01g1960	443	Pfam	B3 DNA binding domain	22	100	IPR003340	GO:0003677
	Mibi01g1960	443	SUPERFAMILY	DNA-binding pseudobarrel domain	334	436	IPR015300	-
	Mibi01g1960	443	SUPERFAMILY	DNA-binding pseudobarrel domain	8	102	IPR015300	-
	Mibi01g1960	443	MobiDBLite	consensus disorder prediction	160	182	-	-
	Mibi01g1960	443	ProSiteProfiles	B3 DNA-binding domain profile.	9	102	IPR003340	GO:0003677
	Mibi01g1960	443	MobiDBLite	consensus disorder prediction	260	299	-	-
	Mibi01g1960	443	MobiDBLite	consensus disorder prediction	109	299	-	-
	Mibi01g1960	443	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	25	437	IPR044837	-
	Mibi01g1960	443	SMART	B3_2	9	102	IPR003340	GO:0003677
	Mibi01g1960	443	SMART	B3_2	341	438	IPR003340	GO:0003677
	Mibi01g1960	443	Gene3D	-	4	103	IPR015300	-
	Mibi01g1960	443	CDD	B3_DNA	8	100	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi01g1960	Mibi-ChrMibi01	28773736	28775696	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi01g1960	305	441	REM Transcription Factor Family	AT1G49480	42.754	4.31e-30	114

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Mibi01g1960		B3	4.7e-18	CL0405