LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi01g1949	ATGGATCGTTCGGCTGTTACAGTTGGTCCTGGAATGGATTTGCCGATCATGCATGATAGCGATCGATATGAACTTGTACGAGATATTGGGTCTGGTAATTTTGGGGTCGCAAGGCTTATGAGGGATAAGCAGACAGAGGAGCTTGTTGCTGTGAAGTATATTGAGAGAGGTGATAAGATAGATGAAAATGTACAAAGGGAAATTATAAATCACAGGTCACTGAGGCATCCTAACATTGTCAGGTTTAAGGAGGTCATATTGACCCCTACACATTTAGCTATTGCAATGGAATATGCTTCTGGAGGGGAGCTATTTGAACGAATCTGCAATGCTGGGCGGTTCAGCGAGGATGAGGCACGATTCTTCTTCCAGCAGCTTGTATCAGGGGTTAGCTATTGTCATGCAATGCAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTAGATGGAAGTCCAGCTCCACGTTTGAAGATTTGTGATTTTGGGTACTCAAAGTCCTCGGTGCTCCATTCACAACCAAAATCTACGGTAGGTACTCCTGCATACATTGCTCCTGAAGTGTTGCTGAAGAAGGAATATGATGGCAAGATTGCAGACGTGTGGTCTTGTGGGGTAACTTTATATGTCATGTTGGTTGGTGCATATCCTTTTGAGGACCCTGACGAACCAAAAAACTTCCGCAAGACAATACATAGGATATTGAATGTCCAATACTCAATTCCTGACTATGTTCATATATCTCCTGAGTGCTGTCATCTGATATCAAGGATCTTTGTTGCGGACCCTTCACAGAGGATAAGCATGCCTGAGATTAGAAACCATGAGTGGTTTCTAAAGAATCTTCCGGCTGATCTCATGGATGAGGGTGCAATGAACAACCAGTTTGAAGAGCCTGATCAACCAATGCAGAGCATCGAACAAATCATGCAGATAATTGCTGAGGCTACAATACCTGCGGCTGGGACTCAGTCTCTCAACCAATATCTTACAGGTAGCTTGGATATTGATGATGACATGGACGAGGACCTGGAGACAGATCCTGACGAGCTTGACATCGATAGCAGTGGAGAAATAATCTATGCTATGTAA	1095	0.4374	MDRSAVTVGPGMDLPIMHDSDRYELVRDIGSGNFGVARLMRDKQTEELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIAMEYASGGELFERICNAGRFSEDEARFFFQQLVSGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPDEPKNFRKTIHRILNVQYSIPDYVHISPECCHLISRIFVADPSQRISMPEIRNHEWFLKNLPADLMDEGAMNNQFEEPDQPMQSIEQIMQIIAEATIPAAGTQSLNQYLTGSLDIDDDMDEDLETDPDELDIDSSGEIIYAM	364

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi01g1949	364	ProSitePatterns	Protein kinases ATP-binding region signature.	29	52	IPR017441	GO:0005524
	Mibi01g1949	364	Gene3D	Phosphorylase Kinase; domain 1	1	98	-	-
	Mibi01g1949	364	FunFam	Serine/threonine-protein kinase SRK2E	99	287	-	-
	Mibi01g1949	364	Gene3D	Transferase(Phosphotransferase) domain 1	99	287	-	-
	Mibi01g1949	364	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	138	150	IPR008271	GO:0004672\|GO:0006468
	Mibi01g1949	364	ProSiteProfiles	Protein kinase domain profile.	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi01g1949	364	PANTHER	SERINE/THREONINE KINASE	22	305	-	-
	Mibi01g1949	364	FunFam	Serine/threonine-protein kinase SRK2E	15	98	-	-
	Mibi01g1949	364	Pfam	Protein kinase domain	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi01g1949	364	SMART	serkin_6	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi01g1949	364	SUPERFAMILY	Protein kinase-like (PK-like)	16	303	IPR011009	-
	Mibi01g1949	364	CDD	STKc_SnRK2-3	22	278	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi01g1949	Mibi-ChrMibi01	28623549	28626932	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi01g1949	16	302	CBL-interacting serine-threonine protein kinases	AT4G24400	41.528	3.45e-69	221

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Mibi01g1949		Pkinase	2.4e-71	CL0016