Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1940 ATGGGAGTTTGTGTCTCTAAACAATCAAAGCCAAACCCATATTCTTTTAGGGAAACAGAAGAAGAAAAACAAGAACAAGATGATAATCGCTATGAAGATTCTTCTTCCCAAATCCCCAAACCCTCTGATGACGTCAATTCAGGGAAGAAGTCACCGTTCTTCGCCTTCTACAGTCCAAGTCCAGCTCATTTTCTCAAGAATTCTTCTCCGGCGGGAGGAGGGAGTAGTAAAAGCTCGAGTTCGACGCCGATGAGGTTTTTCCGGCGGCCTCTTCCTCCGCCGTCGCCGGCAAAGCACATAAAGGCGGTTTTGGCGAGGAGGCAGGGGAGGAAGGCGGCGAAGACATCGATTCCAGAAGAGGGGGAAGAGGAAAAAGAATCTAGGGATTTGGATAAGAGATTTGGGTTTTCTAAGGAATTCACCAGTAGATTGGAAGTTGGAGAAGAAATTGGGAGAGGACATTTTGGTTTTACATGCTCTGCTAGGTTTAAGAAAGGTGAACGTAAGGGCCAGCAAGTGGCTGTGAAGGTCATTCCTAAAGCAAAGATGACAACAGCAATTGCAATTGAAGATGTTAGAAGGGAGGTGAAAATACTACGAGCCTTGACTGGACATAACAATCTGGTGCAATTCTATGATGCATTTGAAGACCAAGAAAATGTCTACATTGTAATGGAGTTATGTCAAGGAGGCGAGCTGTTAGATAGAATACTTTCAAGAGGAGGAAAATACTCTGAAGATGACGCAAAAGCTGTCATTTCACAAATACTGAATGTTGTTGCGTTCTGTCATCTTCAGGGTGTGGTGCACAGAGATCTTAAGCCAGAGAATTTTTTGTATGTTTCAAAGGATGAGAACGCTGAATTAAAAGCTATTGACTTTGGATTATCAGACTTTGTCAAACCAGATGAAAGGCTCAATGATATCGTGGGCAGTGCATACTATGTGGCCCCAGAAGTTCTACATAGATCTTACAGTACGGAAGCTGATGTGTGGAGTATAGGTGTGATAGCATATATTCTCTTGTGTGGTAGCCGTCCATTTTGGGCACGAACAGAATCTGGTATCTTCAGGGCTGTTCTAAAAGCTGATCCAATCTTTGACGAACCTCCTTGGCCATCCTTATCTTCAGAAGCAAAAGATTTTGTTAAGCGCCTGTTGAATAAGGACCCAAGGAAGCGGATATCAGCTGCTCAGGCTCTAGGTCATCCTTGGATAAGGAATTTCAACAATGTAAAAGTTCCTCTTGATATTTTAATATTTAAGCTCATGAAGGCTTATATGCGATCATCATCCTTGCGCAAGGCTTCTTTAAGGGCGTTGTCAAAGACATTGACTGCTGATGAGCTCTATTATCTGAGGGAGCAATTTGCTCTGCTGGAGCCAAGCAAAAATGACAGCATAACATTAGAAAACATCAAGATGGCACTGATGAAACATGCGACAGATGCCATGAAAGAGTCCCACATTTCTGATTATATTGCCTCGCTTAGTTCATTACAATATAGAAGAATGGGTTTTGAAGAATTTTGTGCGGCTGCATTGAGTGTGCATCAGCTTGAAGCTCTTGATCGTTGGGAACAACATGCACGCTGTGCATATGAAATTTTTGAGAAAGATGGAAACCGAGCTATCGTCATCGAAGAACTTGCTTCAGAACTTGGACTTGGGCCTTCTATCCCCCTTCATGTTGTACTTGTGGATTGGATTAGACACACTGATGGGAAGCTAAGCTTTCTAGGGTTTGTCAAATTGTTACATGGTGTATCCAGCCGAACTCTTCAAAAGGTGCAATAG 1797 0.4285 MGVCVSKQSKPNPYSFRETEEEKQEQDDNRYEDSSSQIPKPSDDVNSGKKSPFFAFYSPSPAHFLKNSSPAGGGSSKSSSSTPMRFFRRPLPPPSPAKHIKAVLARRQGRKAAKTSIPEEGEEEKESRDLDKRFGFSKEFTSRLEVGEEIGRGHFGFTCSARFKKGERKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHNNLVQFYDAFEDQENVYIVMELCQGGELLDRILSRGGKYSEDDAKAVISQILNVVAFCHLQGVVHRDLKPENFLYVSKDENAELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPIFDEPPWPSLSSEAKDFVKRLLNKDPRKRISAAQALGHPWIRNFNNVKVPLDILIFKLMKAYMRSSSLRKASLRALSKTLTADELYYLREQFALLEPSKNDSITLENIKMALMKHATDAMKESHISDYIASLSSLQYRRMGFEEFCAAALSVHQLEALDRWEQHARCAYEIFEKDGNRAIVIEELASELGLGPSIPLHVVLVDWIRHTDGKLSFLGFVKLLHGVSSRTLQKVQ 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1940 598 Gene3D - 430 588 - -
Mibi01g1940 598 FunFam CDPK-related kinase 3 136 308 - -
Mibi01g1940 598 SUPERFAMILY EF-hand 438 587 IPR011992 -
Mibi01g1940 598 FunFam Calcium-dependent protein kinase SK5 316 410 - -
Mibi01g1940 598 FunFam CDPK-related kinase 1 137 232 - -
Mibi01g1940 598 ProSiteProfiles Protein kinase domain profile. 144 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi01g1940 598 MobiDBLite consensus disorder prediction 112 130 - -
Mibi01g1940 598 Pfam Protein kinase domain 145 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi01g1940 598 Gene3D Phosphorylase Kinase; domain 1 146 233 - -
Mibi01g1940 598 SMART serkin_6 144 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi01g1940 598 ProSitePatterns Protein kinases ATP-binding region signature. 150 176 IPR017441 GO:0005524
Mibi01g1940 598 FunFam CDPK-related kinase 1 442 515 - -
Mibi01g1940 598 MobiDBLite consensus disorder prediction 64 130 - -
Mibi01g1940 598 SUPERFAMILY Protein kinase-like (PK-like) 140 445 IPR011009 -
Mibi01g1940 598 CDD STKc_CAMK 145 405 - -
Mibi01g1940 598 MobiDBLite consensus disorder prediction 14 34 - -
Mibi01g1940 598 MobiDBLite consensus disorder prediction 64 85 - -
Mibi01g1940 598 PANTHER SERINE/THREONINE-PROTEIN KINASE 128 566 - -
Mibi01g1940 598 Gene3D Transferase(Phosphotransferase) domain 1 234 429 - -
Mibi01g1940 598 MobiDBLite consensus disorder prediction 1 52 - -
Mibi01g1940 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1940 Mibi-ChrMibi01 28506960 28511293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1940 46 595 EF-hand Containing Proteins AT3G50530 74.271 0.0 906
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Mibi01g1940 Pkinase 9.5e-72 CL0016