Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1938 ATGGCTCAGCCAACTTCCGACGCCGCCGCCGCCGCCGATCTGAATCAGGCGCCGCCGCAGCAGCAACCGACGCCGCCACCGCAGCAGCAATGGACGCAGGCGCATCATCAGTATCAACAACAACAACAACAACAACAACAATGGATGAACATGCATCAATATCCAGCTTCAGCTATGGCTATGATTCAGCAGCAGCAGCAGCAGATGATGATGTATCCGCCGCCGCATTATATTCCTTACCTTCATCAATATTACCAACCGCCTTACCACCACCCTCACATGAAACAGCCGCCGCCTTCGCCTTACCACCACTATAATCAGGTGTCTAATGATGAGATCAAGACGATCTGGCTCGGTGACCTTCATCATTGGATGGACGAGAACTACCTCAATAGCTGCTTTGCTCATACCGGCGATGTCTATTCAGTGAAGGTTATACGAAATAAGCAAACTGGTCAGTCGGAGGGATATGGATTTGTTGAGTTTTGTTCACGTGCAACAGCTGAGAAAGTCTTACAGAGCTACCATGGTACTATGATGCCAAATACAGATCAACCGTTTCGCCTAAATTGGGCTGCTTTCAGTTCGGGTGATAAGAGATCTGATGCTAATTCAGATTACTCTGTATTTGTTGGGGACTTGGCTGTGGATGTTACTGATGCTATTCTACAGGAAACCTTTGCAAGCAGATATTCATCTGTTAAGGGAGCAAAAGTTGTCATTGATTCTAGCTCTGGCCGTTCAAAAGGTTACGGTTTTGTTAGGTTTGCTGATGAAAATGAGAGATCCAGGGCACTGACTGAAATGAATGGTCAATATTGTTCAAGTAGGCCAATGCGAATAAGTATTGCTACCCCCAAGAAATCATTTGGACATCAACAAAATTACTCTTCTCAAGCTGTGGTGTTGGCTAATGGATATTCTTCCAATGGTGCTATGGCCCAAGGTTCCCCGTCTGAAGGGGATTCTCTAAACACAACTATATTTGTTGGAGGGCTTGATTCTGACGTCAGTGATGAAGATCTTAGACAACCATTTTTGCAATATGGTGATGTTGTCTCTGTGAAGATACCAGTTGGAAAGGGGTGTGGCTTTGTTCAATTTGCTAACAGAAAGAATGCAGAGGAGGCAATTGAAGCATTGAATGGGACTGTAATAGGGAAGCAGACAGTGCGGCTTTCTTGGGGTCGCAGTCCAGGAAACAAGCATTGGAGATCGGATTCCAACGGAGGGCACCATGGAGGGCAAGGCTATGGTGTAAGACAGCATCAGGCATGA 1278 0.464 MAQPTSDAAAAADLNQAPPQQQPTPPPQQQWTQAHHQYQQQQQQQQQWMNMHQYPASAMAMIQQQQQQMMMYPPPHYIPYLHQYYQPPYHHPHMKQPPPSPYHHYNQVSNDEIKTIWLGDLHHWMDENYLNSCFAHTGDVYSVKVIRNKQTGQSEGYGFVEFCSRATAEKVLQSYHGTMMPNTDQPFRLNWAAFSSGDKRSDANSDYSVFVGDLAVDVTDAILQETFASRYSSVKGAKVVIDSSSGRSKGYGFVRFADENERSRALTEMNGQYCSSRPMRISIATPKKSFGHQQNYSSQAVVLANGYSSNGAMAQGSPSEGDSLNTTIFVGGLDSDVSDEDLRQPFLQYGDVVSVKIPVGKGCGFVQFANRKNAEEAIEALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGHHGGQGYGVRQHQA 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1938 425 SMART rrm1_1 327 394 IPR000504 GO:0003723
Mibi01g1938 425 SMART rrm1_1 115 190 IPR000504 GO:0003723
Mibi01g1938 425 SMART rrm1_1 208 282 IPR000504 GO:0003723
Mibi01g1938 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 286 IPR000504 GO:0003723
Mibi01g1938 425 CDD RRM1_SECp43_like 115 195 - -
Mibi01g1938 425 CDD RRM3_NGR1_NAM8_like 325 396 - -
Mibi01g1938 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 194 IPR000504 GO:0003723
Mibi01g1938 425 SUPERFAMILY RNA-binding domain, RBD 190 303 IPR035979 GO:0003676
Mibi01g1938 425 FunFam Polyadenylate-binding protein RBP47B 113 193 - -
Mibi01g1938 425 Gene3D - 113 193 IPR012677 -
Mibi01g1938 425 MobiDBLite consensus disorder prediction 396 425 - -
Mibi01g1938 425 Gene3D - 307 425 IPR012677 -
Mibi01g1938 425 Gene3D - 194 301 IPR012677 -
Mibi01g1938 425 SUPERFAMILY RNA-binding domain, RBD 86 194 IPR035979 GO:0003676
Mibi01g1938 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 279 IPR000504 GO:0003723
Mibi01g1938 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 183 IPR000504 GO:0003723
Mibi01g1938 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 328 391 IPR000504 GO:0003723
Mibi01g1938 425 MobiDBLite consensus disorder prediction 1 44 - -
Mibi01g1938 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 102 402 - -
Mibi01g1938 425 MobiDBLite consensus disorder prediction 27 44 - -
Mibi01g1938 425 SUPERFAMILY RNA-binding domain, RBD 319 419 IPR035979 GO:0003676
Mibi01g1938 425 CDD RRM2_SECp43_like 206 285 - -
Mibi01g1938 425 FunFam Polyadenylate-binding protein RBP47 308 424 - -
Mibi01g1938 425 FunFam Polyadenylate-binding protein RBP47B 195 297 - -
Mibi01g1938 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 326 398 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1938 Mibi-ChrMibi01 28479460 28483831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1938 116 405 Eukaryotic Initiation Factors Gene Family AT4G34110 28.378 3.15e-27 112