Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1912 ATGGAAGACAACGACGAAGTCGTCTCGTGCTCTTCCGTTTCCGATGACACCGACGACGAGGAGGTCTATTCCAGTGATTGTGAAGATAGCCTCGATAAGGATGATCACCCAGAGGCCGACGTTTATCCTCTTTCCAACGACGAGAGGAAATCGAAGAATATCGATGCCCTTGTGAGGGGCAACCTTGTCGTGAAGACACAATCGCTGCTTCCACGTGTTCTTTCTGTAACACAAGGAGCAGCTGTTTGCAGAAAACCCTTTAAACCTCCAAGCTCCGATGGTTACAATAATGGAAATGGGGAGCTTACACGTCGCCTTTCTGCTCGGAAAAGGTTTGTCCCGTGGGGATCTACCAGACCGGTATTGGTGGCAATTACCAACCGGTTAAATCCACCTTTAAACGTTGAAGAGGATGTTGCCGTAGAGGAAGTGTCTTTGCCACCTGGGATTGAACCTCTAGTGTTGTGGCCCACCGAAGGCTATGAGGATGAGGGCCGTGATTTGACTCCAATAGCAGTTGACCCGTTGCTTGTTCGTTTCCTCAGACCACACCAGAGAGAAGGGGTTCAGTTTATGTTTGACTGTGTTTCAGGGCTACTTAGCACAGCAAATATTCATGGGTGCATCCTGGCAGATGATATGGGTTTGGGAAAGACTTTGCAGTCAATCACACTTCTGTATACACTTCTATGTCAAGGGTTTGATGGAAAGCCAATGGTTAGAAAAGCCATCATTGTGACCCCTACCAGCCTTGTTAGTAATTGGGAAGCTGAAATTAAGAAGTGGGTCGGAGACAGAGTTCGTCTTGTTGCTATGTGTGAAAGCACAAGAGATGATGTTATTTCTGGGATTGACAATTTTTTAAGTCCCCGTGGCTCTCTACAGGTGCTGATAATATCATATGAGACTTTCCGAATGCATTCAGCAAAGTTTGGCCACAGTGACTCTTGTGACCTACTCATATGTGATGAGGCTCACAGGCTGAAGAATGACCAGACAATTACTAATCGGGCATTGGCTTCTCTCTCATGCAAACGTAGAGTGTTGCTTTCAGGAACTCCTTTGCAGAATGACCTAGAGGAATTCTTTGCGATGGTTAACTTCACTAATCCTGGAATATTAGGTGACATTACACATTTTCGCCGGTACTTTGAGGGACCAATTATTTGTGGAAGGGAACCTTCTGCCTCTGCAGATGAGAAGAAGCTGGGTTCTGACCGCTCTGCAGAGTTAAGTGTGAAAGTTAACCAGTTTATATTGAGAAGGACTAACGCATTATTATCAAATCACTTACCACCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTAACTCCACTCCAGTCAGACCTATATAAATATTTTATACAATCCAAAAGTGTTAAACGCGCAATTGCTGAAGATGTAAAGCAATCAAAGATTTTAGCCTACATAACAGTTCTCAAAAAGTTGTGCAACCATCCAAAGCTTATATATGATACCATCCGAAGTGGGAGTCCAGGAACTTCGGGTTTTGAGGACTGCTTACGGTTCTTCCCATCAGAGATGTTATCAGGAAGGTCTGGCTCATGGACAGGAGGGGATGGGGCTTGGATTGAGTTGTCAGGAAAAATGCATGTCTTGGCTAGATTACTTGCCCATATACGGCAGAGGACCAATGACCGCATTGTCCTTGTCTCAAACTACACACAGACTCTGGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCGCACCTGAGGCTTGATGGTGCTACTTCAATCAGTAAAAGGCAGAAGTTAGTAAACCGCTTCAATGACCAATCTAAGGATGAATTTGTTTTTCTCTTGAGTAGCAAGGCTGGTGGGTGTGGCCTCAATTTAATTGGAGGAAATCGGTTAGTCTTGTTCGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTTTGGAGGGATGGGCAGAAGAAAAGGGTGTACATTTATAGATTTTTGAGTGCGGGGACAATAGAGGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGATTACAAAAGGTCATTCAGCAGGAGCAAACAGATAATCTTGAGACTCTGGGTAACTTTTCAACAGAGGTCCTCCGTGATCTGTTCTCATTTCATGAAAGTGTCAAGTCAGAGATTCATGAAAGGATGCATTGCACTCGGTGCCAGACAAATGATGATGGGCCACAAAGCGATGAAGGGAAGTATGTAGCTCATTCAACAATATGTAATGGTGAATCTGATGAGGAAACTACTGATGATATCGGTGGATTTGCAGCACTTGCTGGCTGTATACTCAAGTTAAAGAAATCAGAAAAGCAGGTAGGGACCCCATTGGAAGAAGATTTAGGTAGCTGGGGCCATCATTTCTTTCCAACAACCGTGCCGGATACTATCCTTCAGGCTTCAGCTGGAGATGAGGTGACCTTTGTTTTTACAAACCAAGTAGATGGGAAGCTGTCACCAATCGATTCAACCATCAGTCCAGAGAAACAGCAAGAGGAAAAAAAGGAACTGATCCAACTAAAACGGAACGTCAAACTGAATCCCCTTTCTTTACATCAGAAGCCATCTTACTCCCTCAAGCCTCCAATGAGGCCAGCGTTGGGTACTGTTAGAACGAAAGAAAATATACCAACACAAGCAGCTGTAAATTTCAAAAACTCCCCTGTAAATCAATTACCACAGAAAAGATCATGTCCAACTTACGTCGATATTGATGAATCAGAATAA 2745 0.4404 MEDNDEVVSCSSVSDDTDDEEVYSSDCEDSLDKDDHPEADVYPLSNDERKSKNIDALVRGNLVVKTQSLLPRVLSVTQGAAVCRKPFKPPSSDGYNNGNGELTRRLSARKRFVPWGSTRPVLVAITNRLNPPLNVEEDVAVEEVSLPPGIEPLVLWPTEGYEDEGRDLTPIAVDPLLVRFLRPHQREGVQFMFDCVSGLLSTANIHGCILADDMGLGKTLQSITLLYTLLCQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWVGDRVRLVAMCESTRDDVISGIDNFLSPRGSLQVLIISYETFRMHSAKFGHSDSCDLLICDEAHRLKNDQTITNRALASLSCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGDITHFRRYFEGPIICGREPSASADEKKLGSDRSAELSVKVNQFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKYFIQSKSVKRAIAEDVKQSKILAYITVLKKLCNHPKLIYDTIRSGSPGTSGFEDCLRFFPSEMLSGRSGSWTGGDGAWIELSGKMHVLARLLAHIRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGATSISKRQKLVNRFNDQSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDNLETLGNFSTEVLRDLFSFHESVKSEIHERMHCTRCQTNDDGPQSDEGKYVAHSTICNGESDEETTDDIGGFAALAGCILKLKKSEKQVGTPLEEDLGSWGHHFFPTTVPDTILQASAGDEVTFVFTNQVDGKLSPIDSTISPEKQQEEKKELIQLKRNVKLNPLSLHQKPSYSLKPPMRPALGTVRTKENIPTQAAVNFKNSPVNQLPQKRSCPTYVDIDESE 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1912 914 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 372 IPR014001 -
Mibi01g1912 914 SMART helicmild6 566 650 IPR001650 -
Mibi01g1912 914 FunFam DNA repair and recombination protein RAD54 152 421 - -
Mibi01g1912 914 Pfam SNF2-related domain 184 490 IPR000330 GO:0005524|GO:0140658
Mibi01g1912 914 Gene3D - 422 731 IPR027417 -
Mibi01g1912 914 Pfam Helicase conserved C-terminal domain 540 649 IPR001650 -
Mibi01g1912 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 726 IPR027417 -
Mibi01g1912 914 PANTHER SNF2/RAD54 FAMILY MEMBER 68 844 - -
Mibi01g1912 914 Gene3D - 158 421 IPR038718 -
Mibi01g1912 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 422 IPR027417 -
Mibi01g1912 914 MobiDBLite consensus disorder prediction 12 28 - -
Mibi01g1912 914 MobiDBLite consensus disorder prediction 1 47 - -
Mibi01g1912 914 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 539 696 IPR001650 -
Mibi01g1912 914 MobiDBLite consensus disorder prediction 29 47 - -
Mibi01g1912 914 CDD SF2_C_SNF 533 661 - -
Mibi01g1912 914 FunFam Predicted protein 444 518 - -
Mibi01g1912 914 Gene3D - 444 712 - -
Mibi01g1912 914 SMART ultradead3 177 380 IPR014001 -
Mibi01g1912 914 CDD DEXHc_RAD54 181 422 - -
Mibi01g1912 914 FunFam DNA repair and recombination protein RAD54-like 528 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1912 Mibi-ChrMibi01 28010969 28018280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1912 207 670 RAD5 or RAD16-like Gene Family AT3G16600 24.486 2.12e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi01g1912 SNF2_N 4.7e-53 CL0023