Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1838 ATGGCCAGACCTAAAGCTCAAAGACGAACCCTTGATTCTTACACTGTCAAACACATCAGTAAAACCATCACATCCGGAGATTGCGTGCTTATGCGGCCGTCGGACCCGTCGAATCCGTCGTATGTGGCTAGGATTGAGCGGATCGAAGCTGACTCACGTGGCGCGAACGTTAAGGTTCATGTCCGGTGGTATTATCGGCCGGAGGAGTCAATTGGAGGGCGGAGGCAGTTTCATGGTTCAAAGGAGGTTTTTCTTTCTGATCATTTTGATGTTCAGAGTGCCGATACGATCGAAGGCAAGTGTACGGTTCATAGTTTCAAGAGCTACACGAAGCTTGATGCTGTTGGAAATGAGGATTTCTTCTGCCGCTTCGAATACAATTCCTCCACCGGTGCTTTTGATCCTGATAGAGTGGCTGTGTATTGCAAATGTGAGATGCCCTACAATCCTGACGACCTAATGGTCCAGTGTGAGAGTTGCAGTGATTGGTTTCATCCTGCTTGTATAGATATGACAGTGGAGGAAGCCAAAGGACTTGACCACTTCTTTTGTGAAAACTGTTCTGGCGAAGATACTAAGGTGAATACAAAACGCCATGGAAGGTGA 606 0.4736 MARPKAQRRTLDSYTVKHISKTITSGDCVLMRPSDPSNPSYVARIERIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKSYTKLDAVGNEDFFCRFEYNSSTGAFDPDRVAVYCKCEMPYNPDDLMVQCESCSDWFHPACIDMTVEEAKGLDHFFCENCSGEDTKVNTKRHGR 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1838 201 Pfam PHD-finger 141 188 IPR019787 -
Mibi01g1838 201 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Mibi01g1838 201 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
Mibi01g1838 201 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Mibi01g1838 201 Pfam BAH domain 22 136 IPR001025 GO:0003682
Mibi01g1838 201 SMART BAH_4 21 137 IPR001025 GO:0003682
Mibi01g1838 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 200 IPR013083 -
Mibi01g1838 201 Gene3D - 2 135 IPR043151 -
Mibi01g1838 201 PANTHER OS08G0421900 PROTEIN 5 195 - -
Mibi01g1838 201 SMART PHD_3 141 188 IPR001965 -
Mibi01g1838 201 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1838 Mibi-ChrMibi01 26930698 26933434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1838 31 139 Core DNA Replication Machinery Family AT4G14700 28.440 1.23e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi01g1838 BAH 9.9e-23 No_clan