Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1814 ATGGAGTTTATTGTAGCAGAAGCCTTGAAACCCAGTTTACGAAGAGAACTTTCTTTCCAACAGAAAACCCTTTGCGAGGAAATTCTGTACTTGAACGGGAACAACGGCGTCTCCGGCGAGGATTTCTCGGTGGACGACCTTCTTGACCTCTCTCACGACGAGTTTCAGCAGCACGTGTTCGCTGAAAACGACAAAGATTTCGAAGAAGACGACGAGGAGGAGGACAAAAAAGAAGGCTCCATAGTTTCCGACGACCTGAACTCCAACTCCGGCAGCGATTCCGGCGCCGGCGACTCTGACTCAGCTTTCGCAAGCGAACTCGCCGTTCCGGTGGATGATTTAGCTGAACTTGAATGGGTTTCTCACTTTGTTGACGATTCTCTACCTGAGTTATCCTTCCCGGTTCACTCCGAACAGTCCAAGGCGGCGGAGAATCACCCCACGACGGAGCTCAGACCGGAATTGTCACCGGCGGCGAAAACCCCTAATTTTCCGTCGAAAATTCCGGTGAAGACGAGAAACACCAAGTACAGAAAAGCCAACGCTCTTGTGTGGTCAACGAACTCTATTTTTTACGCTCCCGTCGCCGGGAAATCGCCGGCGGTGAGGCAGAAAAGGAGGAAGACGGTGGAATTGGAAGGGGAAGTGGGTGGGGCCCAGCTACAGCGTCGGTGCAGTCATTGTCATGTGCAAAAGACGCCACAGTGGAGAACCGGCCCACAAGGGGCAAAGACTTTGTGCAATGCATGTGGGGTCCGGTTCAAGTCCGGTCGGCTTTTTCCTGAGTATAGACCGGCTTGTAGCCCGACTTTCTCCAGCGATTTGCACTCTAATAGCCATCGCAAGGTGTTGGAGATGAGGAGGAAGAAGGAGGCCGTTGGACCGGAGTCCAGTTTGACCCAAACGGTTCAGAGCTTCTGA 921 0.5277 MEFIVAEALKPSLRRELSFQQKTLCEEILYLNGNNGVSGEDFSVDDLLDLSHDEFQQHVFAENDKDFEEDDEEEDKKEGSIVSDDLNSNSGSDSGAGDSDSAFASELAVPVDDLAELEWVSHFVDDSLPELSFPVHSEQSKAAENHPTTELRPELSPAAKTPNFPSKIPVKTRNTKYRKANALVWSTNSIFYAPVAGKSPAVRQKRRKTVELEGEVGGAQLQRRCSHCHVQKTPQWRTGPQGAKTLCNACGVRFKSGRLFPEYRPACSPTFSSDLHSNSHRKVLEMRRKKEAVGPESSLTQTVQSF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1814 306 Pfam GATA zinc finger 225 258 IPR000679 GO:0006355|GO:0043565
Mibi01g1814 306 MobiDBLite consensus disorder prediction 83 99 - -
Mibi01g1814 306 MobiDBLite consensus disorder prediction 137 169 - -
Mibi01g1814 306 PANTHER GATA TRANSCRIPTION FACTOR 34 292 - -
Mibi01g1814 306 PIRSF Txn_fac_GATA_plant 14 306 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mibi01g1814 306 Gene3D - 218 292 IPR013088 GO:0006355|GO:0008270
Mibi01g1814 306 SMART GATA_3 219 273 IPR000679 GO:0006355|GO:0043565
Mibi01g1814 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 282 - -
Mibi01g1814 306 ProSiteProfiles GATA-type zinc finger domain profile. 219 255 IPR000679 GO:0006355|GO:0043565
Mibi01g1814 306 FunFam GATA transcription factor 217 301 - -
Mibi01g1814 306 ProSitePatterns GATA-type zinc finger domain. 225 250 IPR000679 GO:0006355|GO:0043565
Mibi01g1814 306 MobiDBLite consensus disorder prediction 61 101 - -
Mibi01g1814 306 CDD ZnF_GATA 224 272 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1814 Mibi-ChrMibi01 26556216 26557234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1814 8 305 C2C2-Gata Transcription Factor Family AT5G66320 40.698 2.03e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi01g1814 GATA 1.6e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g1814 01 26556216 26557234 Mibi01g1814 01 26556216 26557234 ECH