LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi01g1783	ATGCATACGACTGACTCCAAAAACCCTAGCCTGTCGTCTTCTTCCTCTGCCGATCACTCAATTTCTGAATCTTCCTCTCTTCTCTCTGCAACAACAATGGCAAACCCTAAGGTCTTCTTCGACATGACCATCGGCGGCCAACCCGCCGGCCGGATCGTCATGGAGCTTTACGCCGATTGCACTCCGAGAACCGCAGAGAACTTCCGTGCTCTCTGCACCGGAGAGAAGGGAACCGGACGCAGCGGCAAGCCACTTCACTTCAAGGGCTCCTCCTTCCACCGTGTGATCCCCGGATTCATGTGCCAGGGCGGCGATTTCACCGCCGGCAACGGCACCGGCGGCGAGTCCATTTACGGCGCCAAGTTCGCCGACGAGAACTTCGTGAAGAAGCACACCGGTCCTGGAATCCTCTCCATGGCTAATGCTGGCCCTGGAACCAACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTTGACGGCAAGCACGTGGTGTTTGGACAGGTCGTTGAAGGCATGGATGTGGTGAAGAACATCGAGAAGGTCGGATCTAGCTCTGGCAGGACCTCAAAGCCGGTGGTGGTTGCTAACTGCGGTCAACTTTAG	612	0.567	MHTTDSKNPSLSSSSSADHSISESSSLLSATTMANPKVFFDMTIGGQPAGRIVMELYADCTPRTAENFRALCTGEKGTGRSGKPLHFKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKNIEKVGSSSGRTSKPVVVANCGQL	203

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi01g1783	203	SUPERFAMILY	Cyclophilin-like	28	203	IPR029000	-
	Mibi01g1783	203	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	39	201	IPR002130	GO:0000413\|GO:0003755
	Mibi01g1783	203	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	135	150	IPR002130	GO:0000413\|GO:0003755
	Mibi01g1783	203	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	150	162	IPR002130	GO:0000413\|GO:0003755
	Mibi01g1783	203	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	56	71	IPR002130	GO:0000413\|GO:0003755
	Mibi01g1783	203	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	92	104	IPR002130	GO:0000413\|GO:0003755
	Mibi01g1783	203	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	163	178	IPR002130	GO:0000413\|GO:0003755
	Mibi01g1783	203	PIRSF	Peptidylpro_ismrse	25	203	IPR024936	GO:0003755
	Mibi01g1783	203	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	39	202	IPR002130	GO:0000413\|GO:0003755
	Mibi01g1783	203	Gene3D	-	27	203	IPR029000	-
	Mibi01g1783	203	FunFam	Peptidyl-prolyl cis-trans isomerase	31	203	-	-
	Mibi01g1783	203	CDD	cyclophilin_ABH_like	36	201	-	-
	Mibi01g1783	203	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	37	203	-	-
	Mibi01g1783	203	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	87	104	IPR020892	GO:0003755\|GO:0006457

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi01g1783	Mibi-ChrMibi01	26105841	26106452	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi01g1783	50	184	U-box Gene Family	AT5G67530	47.794	6.79e-29	110

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mibi01g1783	01	26105841	26106452	Mibi01g1783	01	26105841	26106452	ECH