Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1723 ATGCGTCCACACACACACACTATTTACAAATGCTCATCTATCCCCTATTTATACATTTACCTTCTCTTCTTCACCACACCACACCACACACAATCAATCAATATGGCTTTCTTCCTCTTCTTCCTCTCCCTTCTTGTTTCCTCTGCCACTGCTTGCGATCGCTGTGTCACCCAATCCAAGGCCTCCTACTTCTCCAAATCCTCTGCTCTTTCCTCTGGGGCTTGTGGGTATGGCTCCTTGGCCGTCGGATTCAGCGGCGGACATCTGGCGGCGGCGGTGCCTTCTCTCTACAAAGACGGCGCCGCTTGTGGGGCTTGTTTTCAGGTAAGATGTAAGAACCCGAGTTTGTGTACAAAAGAAGGGACCACCGTAGTTGTCACCGATCTCAACACCAACAATCACACTGATTTGGTGCTCAGCAGCAGAGCCTTCTCAGCCATGGCTAATAAGGGTCAAAGTCAACAAATTCTGAAGCTTGGAATCGTCGACGTTGAGTACAAGAGAGTACCGTGCGTGTACAAAAACCGGAACTTGGGAGTGAGGGTGGAAGAATCAAGCAAGAAACCCAACTACTTGGCGATCACATTTTTGTATCAAGGAGGTCAAACGGAGATAGTGGGGGTGGATGTGGCTCAGGTGGGGTCTTCAAACTGGAGCTTCATGAGCAGGAAGAGAGGGGCAATATGGGAAACAGACAGGGTACCTGGGGGAGCATTGCAATTAAGGATGGTGGTGACGTCAGGGTTTGACGGGAAATGGATATGGGCCCCAAAGGTGCTGCCGGAGGAGTGGAAGGCCGGCGTCATCTACGACGCCGGAGTTCAGATCAATGATATCTCAAAACAGACATGTTCTCCCTGCGATGATGCCTCTTGGTCTTGA 882 0.5045 MRPHTHTIYKCSSIPYLYIYLLFFTTPHHTQSINMAFFLFFLSLLVSSATACDRCVTQSKASYFSKSSALSSGACGYGSLAVGFSGGHLAAAVPSLYKDGAACGACFQVRCKNPSLCTKEGTTVVVTDLNTNNHTDLVLSSRAFSAMANKGQSQQILKLGIVDVEYKRVPCVYKNRNLGVRVEESSKKPNYLAITFLYQGGQTEIVGVDVAQVGSSNWSFMSRKRGAIWETDRVPGGALQLRMVVTSGFDGKWIWAPKVLPEEWKAGVIYDAGVQINDISKQTCSPCDDASWS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1723 293 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576
Mibi01g1723 293 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Mibi01g1723 293 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Mibi01g1723 293 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576
Mibi01g1723 293 PRINTS Expansin/Lol pI family signature 258 272 IPR007118 GO:0005576
Mibi01g1723 293 SMART dpbb_1 90 166 IPR007112 -
Mibi01g1723 293 Pfam Lytic transglycolase 91 166 IPR009009 -
Mibi01g1723 293 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 190 272 IPR007117 -
Mibi01g1723 293 Gene3D - 173 277 IPR036749 -
Mibi01g1723 293 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 176 IPR007112 -
Mibi01g1723 293 SUPERFAMILY PHL pollen allergen 176 271 IPR036749 -
Mibi01g1723 293 Pfam Expansin C-terminal domain 180 261 IPR007117 -
Mibi01g1723 293 PRINTS Major pollen allergen Lol pI signature 197 212 IPR005795 GO:0005576|GO:0019953
Mibi01g1723 293 PRINTS Major pollen allergen Lol pI signature 181 196 IPR005795 GO:0005576|GO:0019953
Mibi01g1723 293 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Mibi01g1723 293 PRINTS Major pollen allergen Lol pI signature 111 121 IPR005795 GO:0005576|GO:0019953
Mibi01g1723 293 PRINTS Major pollen allergen Lol pI signature 248 265 IPR005795 GO:0005576|GO:0019953
Mibi01g1723 293 Gene3D - 44 171 IPR036908 -
Mibi01g1723 293 PANTHER EXPANSIN-B3 42 275 - -
Mibi01g1723 293 SUPERFAMILY Barwin-like endoglucanases 42 174 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1723 Mibi-ChrMibi01 25404368 25406261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1723 49 293 Expansin Gene Family AT4G38400 65.992 1.90e-112 324