Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1706 ATGTCTCTCTCAGACGACGGTTCCTCCCTCCCTCCTTCTTCTCCATCTCCATCTCCGGCCACCCCTCCGACCCACAAACCTCACTGCCGTAGCAAACGCAAGAAACGCCTCTCCCTCATCGACCACAACAACAACAACCTCCCTACTTTCAACCCCAAACCACCCAATCCTCACTCCTCCGCCCCCATGGTCACACGCCCTTGTACTGAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTCTTCGGCCACATGCGCTGCCATCCCGAACGCCAATGGCGAGGAATTAACCCCCCGCCAAATCTCCAGCGACCTCAGCCACAACCACCGCCTCCTCCGCCGCCGCCCGAACTCTCGACGATGACGGCGGAGGATCACGAAATCGCGGCGGGGCTTCTGCTCCTCGCGAATTCCTCCTCGGCTGCTTCGATGAGGTTTGAGTGTTCGAGTTGTAAGAAGGTGTTTGGGTCTAGGCAGGCGCTGGGAGGGCACAGGGCCAGTCATAAGAATGTGAAGGGTTGCTTTGCGAACGAAGAGGAAGACGAAGAATCTACCACCACCACGACGATGATGATGAATGTTCTGGAAGGGCATAGGTGTGGGATTTGCTTCAGGGTTTTCCCTAGTGGCCAAGCGCTTGGTGGTCACATGAGGTGTCACTGGGACAAAGGGGACCCACCATCACCTGAACAACAACAACAATTTCAACTTCAACTTCCTCTTCCTTCTAATTCCATTATTCCCCAATTTCATCATCCAGGGTTTGGACTTGACCTCAATTTGCCTCCTCCTCCTCCTCATGACTCCCCTGCTATCACTCTGGATTTGAGATTGGGCCTTTAA 843 0.5457 MSLSDDGSSLPPSSPSPSPATPPTHKPHCRSKRKKRLSLIDHNNNNLPTFNPKPPNPHSSAPMVTRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNLQRPQPQPPPPPPPPELSTMTAEDHEIAAGLLLLANSSSAASMRFECSSCKKVFGSRQALGGHRASHKNVKGCFANEEEDEESTTTTTMMMNVLEGHRCGICFRVFPSGQALGGHMRCHWDKGDPPSPEQQQQFQLQLPLPSNSIIPQFHHPGFGLDLNLPPPPPHDSPAITLDLRLGL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1706 280 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Mibi01g1706 280 SUPERFAMILY beta-beta-alpha zinc fingers 67 168 IPR036236 -
Mibi01g1706 280 MobiDBLite consensus disorder prediction 92 120 - -
Mibi01g1706 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 173 IPR013087 -
Mibi01g1706 280 MobiDBLite consensus disorder prediction 1 64 - -
Mibi01g1706 280 MobiDBLite consensus disorder prediction 100 119 - -
Mibi01g1706 280 Pfam C2H2-type zinc finger 145 169 - -
Mibi01g1706 280 Pfam C2H2-type zinc finger 198 223 - -
Mibi01g1706 280 Pfam C2H2-type zinc finger 67 90 - -
Mibi01g1706 280 ProSitePatterns Zinc finger C2H2 type domain signature. 200 220 IPR013087 -
Mibi01g1706 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Mibi01g1706 280 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 43 280 - -
Mibi01g1706 280 SMART c2h2final6 198 220 IPR013087 -
Mibi01g1706 280 SMART c2h2final6 66 88 IPR013087 -
Mibi01g1706 280 SMART c2h2final6 146 168 IPR013087 -
Mibi01g1706 280 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Mibi01g1706 280 Gene3D Classic Zinc Finger 143 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1706 Mibi-ChrMibi01 25262916 25263758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1706 53 280 C2H2 Transcription Factor Family AT4G35280 51.020 3.35e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi01g1706 zf-C2H2_6 3.3e-10 CL0361