LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi01g1658	ATGGAACAGACGTCGGAAGGTAGCGGCGGAGGCGGCGGCTGCGACGGTGGGATTTCCCGGTTCCGTTCAACTCCGGCGACGTGGTTAGAAGCTTTGCTTAAAGAAGAAGATGTAGAAGAAGACCCATTGGGTCCCACACAGTGCTTCACTCAGCTCCTCGCTACAGGTACTGAAAATTTGTCTAGAAATTCTGCGCCTTTCGATTCTCCGGTGGCTGATAGAGGCGCTTTCGATGTTGGGTCGTCTTCGTCTGCTGGATTTTCCCGCCAGAATAGTTCTCCGGCGAATTTATTTGGTCATTCAATGGTTACAGCCTCTGAAACAGGGTATTTCCCTAAGTATGGGGTTCAATACAGTCATGATGTTAGCCCACAAGATATCGATGTTCTTTCTATGGCTGATTTTAAACCAATCAGACAGAATGTTGAGCATACTGGAAAAGCACCAGACATAGACATTGAGAAGATTTTGGAGGATTCTGTACCTTGCAGAGTTCGGGCGAAGCGTGGACATGCTACACATCCAAGGAGCATTGCTGAAAGGGTTCGTAGAACTCGGATAAGTGATCGCATACGGAAGCTTCAAGAACTTGTGCCAAATATGGACAAGCAAACAAATACTGCAGAAATGCTAGACGAGGCTGTAGCATATGTGAAGTCTCTGCAGAAGCAAATCGAGGAACTTACAGAGCACCAAAGAAAATGCAAATGCACAGTTCAAGAGTAA	726	0.4669	MEQTSEGSGGGGGCDGGISRFRSTPATWLEALLKEEDVEEDPLGPTQCFTQLLATGTENLSRNSAPFDSPVADRGAFDVGSSSSAGFSRQNSSPANLFGHSMVTASETGYFPKYGVQYSHDVSPQDIDVLSMADFKPIRQNVEHTGKAPDIDIEKILEDSVPCRVRAKRGHATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTAEMLDEAVAYVKSLQKQIEELTEHQRKCKCTVQE	241

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi01g1658	241	Gene3D	-	168	241	IPR036638	GO:0046983
	Mibi01g1658	241	SMART	finulus	177	227	IPR011598	GO:0046983
	Mibi01g1658	241	Pfam	Helix-loop-helix DNA-binding domain	176	222	IPR011598	GO:0046983
	Mibi01g1658	241	FunFam	Transcription factor bHLH130 family	172	240	-	-
	Mibi01g1658	241	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	171	221	IPR011598	GO:0046983
	Mibi01g1658	241	MobiDBLite	consensus disorder prediction	1	21	-	-
	Mibi01g1658	241	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	82	235	-	-
	Mibi01g1658	241	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	170	237	IPR036638	GO:0046983
	Mibi01g1658	241	Coils	Coil	211	238	-	-

Showing 1 to 9 of 9 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi01g1658	Mibi-ChrMibi01	24473437	24481944	Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi01g1658	20	241	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G09180	46.502	2.48e-57	181

Showing 1 to 1 of 1 entries

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Mibi01g1658		HLH	1e-09	No_clan

Showing 1 to 1 of 1 entries