Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1561 ATGGCTTCTTCGAATGGTGGCGTGCCACCCGGGTTCCGGTTTCATCCGACTGATGAAGAGCTTCTTCATTATTACTTGAAGAAGAAGGTGAACTTTCAAAAATTTGACATGGAGGTCATTAGGGAAGTCGACTTGAACAAGATTGAGCCTTGGGACTTGCAAGAGAGGTGCAGAATAGGGTCAACACCACAAAATGAGTGGTACTTCTTCAGCCACAAGGACAGGAAGTATCCGACGGGATCAAGGACGAACCGGGCGACGAACGCCGGCTTTTGGAAGGCGACGGGGCGAGACAAATGCATCAGAAACAGCTTCAAGAAGATTGGCATGAGGAAGACTCTTGTCTTCTACAGAGGCCGAGCTCCACATGGCCATAAGACTGATTGGATCATGCATGAATATCGCCTTGAAGATTCTGACGATGCTCAACCTAATCCCAATGAAGATGGGTGGGTTGTTTGCAGAGTGTTCAAGAAGAAGAACCTATTCAAGATTGGAAATGAAGGAAGCTCCATGCATAACACAACAGACCAACAACTCAACAATTCTTCAAGCATCAATCAACCTCGCTCCTTCATGCACAGAGAAAGCCAATACTTGCTTCATCACCATCAACAACAAAACCCTAGAAACTCCTCTTCCTCTTCCGGCTTCCAACTCGAAAAACCTGAGCTTGCCCTTCATTATCCTCCTCCTCACTTGCAAAACCCTCAATACTCTCTCTTTCAAGCACAACCTCTCCTTCCTCCTGCAACCCACTACACTTCCTATTCGTCAGCCCTACCTTCAGACACACCCACCATGGCTGCCAAACAACTCATGACGAATCCGGGGACTGGAGATTGCGATAGTGGCGGTGGTAGTGAGGGCTTGAGGTACCAAGTCTCGGAGACTGGAAACATGGAGGTTGGCACGTGTGAACCAACAGGTCAAGAGATTGGAACGACAAGAGAAGATCAAGGGTTTAATGAATGGGGTGTGCTTGATAGGCTTGTGGTAACCTCTTCTCATCATCACCATCTTGGAAATGAAGAATCATCCAAAGGGATTAGGTTTGAGGATGCAAGTAATAATAATAATAATAATCCACAATCTGTTCATCAGATTAATCATCATCAGCATCAGCTTTCTTTGCGTGGAGAAGTTGACTTTTGGGGATATGGAAAACAATAA 1173 0.4595 MASSNGGVPPGFRFHPTDEELLHYYLKKKVNFQKFDMEVIREVDLNKIEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSFKKIGMRKTLVFYRGRAPHGHKTDWIMHEYRLEDSDDAQPNPNEDGWVVCRVFKKKNLFKIGNEGSSMHNTTDQQLNNSSSINQPRSFMHRESQYLLHHHQQQNPRNSSSSSGFQLEKPELALHYPPPHLQNPQYSLFQAQPLLPPATHYTSYSSALPSDTPTMAAKQLMTNPGTGDCDSGGGSEGLRYQVSETGNMEVGTCEPTGQEIGTTREDQGFNEWGVLDRLVVTSSHHHHLGNEESSKGIRFEDASNNNNNNPQSVHQINHHQHQLSLRGEVDFWGYGKQ 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1561 390 MobiDBLite consensus disorder prediction 166 188 - -
Mibi01g1561 390 MobiDBLite consensus disorder prediction 167 188 - -
Mibi01g1561 390 FunFam NAC domain-containing protein 17 163 - -
Mibi01g1561 390 MobiDBLite consensus disorder prediction 338 375 - -
Mibi01g1561 390 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
Mibi01g1561 390 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Mibi01g1561 390 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Mibi01g1561 390 MobiDBLite consensus disorder prediction 352 375 - -
Mibi01g1561 390 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 213 - -
Mibi01g1561 390 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1561 Mibi-ChrMibi01 22078616 22082972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1561 1 386 NAC Transcription Factor Family AT1G33280 51.031 5.72e-124 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mibi01g1561 NAM 9.5e-37 No_clan