Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1559 ATGGTTGTCAATGAAAGGCCGTTGAAAAGGATGAAGAGGAGAGTCTCCGCCGATCTTCACGATTTCTTCACTTTTCCGGCCGCCGCTGGCCACTTCTTCGACGATGTCGGCGGCGCCGGTCAACCCTTCCGGAAAATCGTCCCTCGATTTCTCTCAAACTACGCCATGGTCACTTACCCGCCGTCTTTGTTTTCGTCGCTGATGACGTGGCACATCACTTTGAGGATCGGAGGAATCGTCGAAGGCTCCGATCTGTCTCCTGCGATCGTCACTCTCGATGTTGTCGAGGAAGATGTCACCCGATCTCGGGCCTCTGTGTACTGTGACCAGTGCCGAGTTGTTGGCTGGAGTGGACATCCTGTATGTAGAAAGCGATATCACTTCATTATCCGAGCTTCAAGAAATCACATGGATGCATATGAGAGACCTTGCTCGTTATGTGGGAAATCTACTGGACTATCAGAAGCAAGGTGTAAATGGTGTGACACTGTGATTACGGTGGAAGATCTTGAGGATTGGGTGTACAGTCAAATCGAAGACAACACCCATATTCTGCACGGGATTGTTCACTCCAATGGCTATGGCCATTTGCTTACTCTTAATGGAAGAGAGGGTGGTTCAAGTCTCCTCTCCGGGTCTGACATAATGAGTTTTTGGGACAGGCTATGTGTTGCACTTGCTGTTAGGAAAGTTAGTGTGATGGATTTGTCCAAGAAATTTGGGGTGGAATACCGGTTGCTTCATGCAATCACCAATGGGCGTTCTTGGTATGGGAATTGGGGTTATGAATTTGGGACTGGTAGCTATGCTCTCACCCAGGAATCGTACCAAAAAGCAGTGAATACCCTGTCAAGCATGCCCCTATCTGATTTTTTATTCCAGGATCGTGGGCCTCGAAGTCGCTTGCAGTGTGTTATTTCTCTTTATCAATCTTTGGCAGACGCTGAACTTTTTACTATCAAAGATCTGTTCTCCTTTTTGGTGTCCTTAATTCGCGACTTTCACAAGCCTTTGACTGCAAGAACAGCGAATGCAGAAGCTTGCAATGTGTTGTGTGCTTGGACAAGCAATGATGTTGAAGCTGTGCAACAGGCTTTAATTAAGGTTCTGCTTGCATCCGCATCCTCTAGCGAGTCGAAATGGGTGTTGAGACGAGCCCTCAAGGGTGCATTAAGTAGGAGCGTTGCGTCTCCGGAGCTTCTAGATTACAGTCTGAAACATCTTGGTGGAAAATTAGCCGGGTATGGTATGGTAGTTAAGTCAAGATGCAATCCCACATCTAGTGCTGTGGAGTTCAGCCTTGAATCCTTGAATGTTGCGGAGAATGATGTTAGCATAAATTCAGGATACCCGTCAGAAGAGCAAGTGATTGCTGATCTGAAGTTCTTGCTTGATTCGATTATTCATCCCGATAGGATGGTGAGCTACAGGCCCAAGATTACGAGGAAGCAGGTGGCTGATTCGGCCAGGAAGCTCCTTGACTGCAAGCAGTTCATGAAGGATTACAAGCCTGAGAGGATGGGAGGTGATCAAGTGTCTTCATGTATTAGGCTGTGGTGTCATGTGGAGCTTTCTGACCAGCCAAAAGAAGATCCAACCCCTCCTGAACTGATCTTGCTGCCCTTGAATGCCACCGTAGCTGAGCTCAAGAAGGAAGCAACTAATACTTTTCAAGAAGTGTATGCCATGTATAAGAGGTTTCAAGCCGATGAACTTCTGGAATATGGGTCCATTGAGGATAATCTCACCGTGAAGTTCCTGCTTGGAACGAGTGGGTCCGTCCGGGTTTTAGGTAAATGCCATGCGAAACATGGCCTAAACCGCTTCCGAATGGAGAGAGGGATGGAGACGTGGAAAGTTGATTGCCCTTGTGGGGCCAAGGACGATGATGGGGAGAAAATGTTGGCATGTGATAGTTGCAGTGTTTGGCAACACACCAGGTGTGCTGGAATTGATAGCTCCATTGCTGTTCCTTCCAAGTTCGTGTGCTTGAGATGCATCAATTCATTCCGCAAGGAGGCTAAGAAAAAGCCCGAACCTGTTGAACCAAAAATCCATCCTATGGATGAAGCGAGAAAATACAAAGTGAGCGAAGCAAAAATCCGCCCTGTGTATGCGGCAAAAACATACGATGTGGGCGAGGCCCCAAAAAGCAACCCAGTGAATGGAGCAAAAATCCATGAGGTGGGAGACGCAAAAATCGACACAGTGAATGGAGCAGAAAACTATGATGTGGGTGAAGCCAAAATCAACCCAGTGGATAGAGCAAAAAACTACGATGTGGACGAAGCAGAAAGCTACGATGAGGGTGAAGCAATAATCAACCCAGTGAATGAAGCGGAGTACTGTGATGTGGATGAAGTAAATATAACTTGGAAAGAGACTAATTCTATGGATGATGCAAGAACGCCCAGCAAAGCAAAGACGTCATGCAGAGGTGAGGTGGTAGCGGTTGGCAGTCCTGCAGTCGCATGCAACCTGGCTCTGCGTTTTGGGGTTCGTTGA 2505 0.4747 MVVNERPLKRMKRRVSADLHDFFTFPAAAGHFFDDVGGAGQPFRKIVPRFLSNYAMVTYPPSLFSSLMTWHITLRIGGIVEGSDLSPAIVTLDVVEEDVTRSRASVYCDQCRVVGWSGHPVCRKRYHFIIRASRNHMDAYERPCSLCGKSTGLSEARCKWCDTVITVEDLEDWVYSQIEDNTHILHGIVHSNGYGHLLTLNGREGGSSLLSGSDIMSFWDRLCVALAVRKVSVMDLSKKFGVEYRLLHAITNGRSWYGNWGYEFGTGSYALTQESYQKAVNTLSSMPLSDFLFQDRGPRSRLQCVISLYQSLADAELFTIKDLFSFLVSLIRDFHKPLTARTANAEACNVLCAWTSNDVEAVQQALIKVLLASASSSESKWVLRRALKGALSRSVASPELLDYSLKHLGGKLAGYGMVVKSRCNPTSSAVEFSLESLNVAENDVSINSGYPSEEQVIADLKFLLDSIIHPDRMVSYRPKITRKQVADSARKLLDCKQFMKDYKPERMGGDQVSSCIRLWCHVELSDQPKEDPTPPELILLPLNATVAELKKEATNTFQEVYAMYKRFQADELLEYGSIEDNLTVKFLLGTSGSVRVLGKCHAKHGLNRFRMERGMETWKVDCPCGAKDDDGEKMLACDSCSVWQHTRCAGIDSSIAVPSKFVCLRCINSFRKEAKKKPEPVEPKIHPMDEARKYKVSEAKIRPVYAAKTYDVGEAPKSNPVNGAKIHEVGDAKIDTVNGAENYDVGEAKINPVDRAKNYDVDEAESYDEGEAIINPVNEAEYCDVDEVNITWKETNSMDDARTPSKAKTSCRGEVVAVGSPAVACNLALRFGVR 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1559 834 CDD PHD_MMD1_like 621 666 - -
Mibi01g1559 834 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 14 676 - -
Mibi01g1559 834 Pfam PHD-finger 622 668 IPR019787 -
Mibi01g1559 834 ProSitePatterns Zinc finger PHD-type signature. 622 666 IPR019786 -
Mibi01g1559 834 SUPERFAMILY FYVE/PHD zinc finger 612 670 IPR011011 -
Mibi01g1559 834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 672 IPR013083 -
Mibi01g1559 834 SMART PHD_3 621 667 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1559 Mibi-ChrMibi01 22022967 22026241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1559 37 666 PHD Transcription Factor Family AT5G22260 29.508 1.95e-82 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi01g1559 PHD 1.7e-08 CL0390